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Supriya Khedkar
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SMART: recent updates, new developments and status in 2020
I Letunic, S Khedkar, P Bork
Nucleic acids research 49 (D1), D458-D460, 2021
9852021
Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription
C Kahramanoglou, AI Prieto, S Khedkar, B Haase, A Gupta, V Benes, ...
Nature communications 3 (1), 886, 2012
1452012
GUNC: detection of chimerism and contamination in prokaryotic genomes
A Orakov, A Fullam, LP Coelho, S Khedkar, D Szklarczyk, DR Mende, ...
Genome biology 22, 1-19, 2021
1112021
Towards the biogeography of prokaryotic genes
LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ...
Nature 601 (7892), 252-256, 2022
982022
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
S Khedkar, G Smyshlyaev, I Letunic, OM Maistrenko, LP Coelho, ...
Nucleic acids research 50 (6), 3155-3168, 2022
392022
Genome sequencing unveils a novel sea enterotoxin-carrying PVL phage in Staphylococcus aureus ST772 from India
S Prabhakara, S Khedkar, SM Shambat, R Srinivasan, A Basu, ...
PloS one 8 (3), e60013, 2013
302013
Draft genome sequence of Staphylococcus aureus 118 (ST772), a major disease clone from India
S Prabhakara, S Khedkar, RM Loganathan, S Chandana, M Gowda, ...
Journal of bacteriology 194 (14), 3727-3728, 2012
182012
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ...
Nucleic acids research 51 (D1), D760-D766, 2023
162023
Comparative genomics of interreplichore translocations in bacteria: A measure of chromosome topology?
S Khedkar, ASN Seshasayee
G3: Genes, Genomes, Genetics 6 (6), 1597-1606, 2016
152016
Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12
R Krishnamurthi, S Ghosh, S Khedkar, ASN Seshasayee
Msphere 2 (6), 10.1128/msphere. 00392-17, 2017
142017
Draft genome sequence of Staphylococcus aureus ST672, an emerging disease clone from India
S Khedkar, S Prabhakara, RM Loganathan, C S, M Gowda, G Arakere, ...
Journal of bacteriology 194 (24), 6946-6947, 2012
102012
Structure and function of DNA transposition assemblies involved in antibiotic resistance spreading
O Barabas, G Smyshlyaev, B Isbilir, S Khedkar, C Rojas‐Cordova, ...
The FASEB Journal 36, 2022
2022
SNP analysis implicates role of cytosine methylation in introducing consequential mutations in Vibrio cholerae genomes
M Sharda, ASN Seshasayee, S Khedkar
bioRxiv, 070839, 2016
2016
Draft Genome Sequence of Staphylococcus
ASN Seshasayee, SC Loganathan, M Gowda, G Arakere, S Prabhakara, ...
J. Bacteriol 194 (14), 3727, 2012
2012
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