Chad Niederhuth
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The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
DJ Bertioli, SB Cannon, L Froenicke, G Huang, AD Farmer, EKS Cannon, ...
Nature genetics 48 (4), 438-446, 2016
Widespread natural variation of DNA methylation within angiosperms
CE Niederhuth, AJ Bewick, L Ji, MS Alabady, K Do Kim, Q Li, NA Rohr, ...
Genome biology 17 (1), 1-19, 2016
On the origin and evolutionary consequences of gene body DNA methylation
AJ Bewick, L Ji, CE Niederhuth, EM Willing, BT Hofmeister, X Shi, L Wang, ...
Proceedings of the National Academy of Sciences 113 (32), 9111-9116, 2016
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ...
Gigascience 7 (2), gix124, 2018
Putting DNA methylation in context: from genomes to gene expression in plants
CE Niederhuth, RJ Schmitz
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 149-156, 2017
Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2by RNA-Seq
CE Niederhuth, OR Patharkar, JC Walker
BMC genomics 14 (1), 37, 2013
The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants
AJ Bewick, CE Niederhuth, L Ji, NA Rohr, PT Griffin, J Leebens-Mack, ...
Genome biology 18 (1), 65, 2017
Covering your bases: inheritance of DNA methylation in plant genomes
CE Niederhuth, RJ Schmitz
Molecular plant 7 (3), 472-480, 2014
Letting Go is Never Easy: Abscission and Receptor‐L ike Protein Kinases
CE Niederhuth, SK Cho, K Seitz, JC Walker
Journal of Integrative Plant Biology 55 (12), 1251-1263, 2013
A comparative analysis of 5-azacytidine-and zebularine-induced DNA demethylation
PT Griffin, CE Niederhuth, RJ Schmitz
G3: Genes, Genomes, Genetics 6 (9), 2773-2780, 2016
The Dnmt3L ADD domain controls cytosine methylation establishment during spermatogenesis
G Vlachogiannis, CE Niederhuth, S Tuna, A Stathopoulou, K Viiri, ...
Cell reports 10 (6), 944-956, 2015
pENCODE: a plant encyclopedia of DNA elements
AK Lane, CE Niederhuth, L Ji, RJ Schmitz
Annual review of genetics 48, 49-70, 2014
DVL genes play a role in the coordination of socket cell recruitment and differentiation
ER Valdivia, D Chevalier, J Sampedro, I Taylor, CE Niederhuth, ...
Journal of experimental botany 63 (3), 1405-1412, 2012
From gigabyte to kilobyte: a bioinformatics protocol for mining large RNA-Seq transcriptomics data
J Li, J Hou, L Sun, JM Wilkins, Y Lu, CE Niederhuth, BR Merideth, ...
PloS one 10 (4), e0125000, 2015
Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus
KA Bird, C Niederhuth, S Ou, M Gehan, JC Pires, Z Xiong, R VanBuren, ...
bioRxiv, 814491, 2019
Epigenetic diversity and application to breeding
SKK Raju, CE Niederhuth
Advances in Botanical Research 88, 49-86, 2018
Establishment, maintenance, and biological roles of non-CG methylation in plants
SK Kenchanmane Raju, EJ Ritter, CE Niederhuth
Essays in Biochemistry 63 (6), 743-755, 2019
DNA methylation signatures of duplicate gene evolution in angiosperms
SKK Raju, SM Ledford, CE Niederhuth
bioRxiv, 2020
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