Dong (Walter) Xie

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Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Joseph HeledAuckland UniversityVerified email at cs.auckland.ac.nz
Remco BouckaertVerified email at cs.auckland.ac.nz
Denise KühnertMax Planck Institute for the Science of Human HistoryVerified email at shh.mpg.de
Timothy G VaughanDepartment of Biosystems Science and Engineering, ETH Zürich, SwitzerlandVerified email at bsse.ethz.ch
Chieh-Hsi WuLecturer in Statistics, University of SouthamptonVerified email at soton.ac.uk
Fábio Kuriki MendesPostdoctoral fellow, Washington University in St. LouisVerified email at wustl.edu
Tanja StadlerETH ZurichVerified email at env.ethz.ch
Huw Alexander OgilvieRice UniversityVerified email at rice.edu
Chi ZhangInstitute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of SciencesVerified email at ivpp.ac.cn
Nicola Felix MüllerPostdoctoral Researcher at the Fred Hutchinson Cancer Research Center, SeattleVerified email at fredhutch.org
Richard D NewcombThe NZ Institute for Plant & Food ResearchVerified email at plantandfood.co.nz
Thomas R. BuckleyLandcare Research & School of Biological Sciences, University of AucklandVerified email at landcareresearch.co.nz
Andrew DopheideLandcare Research, New ZealandVerified email at landcareresearch.co.nz
Sebastian BonhoefferTheoretical Biology, ETH ZurichVerified email at env.ethz.ch
Roger D. KouyosUniversity of Zurich; University Hospital ZurichVerified email at uzh.ch
W.L. XuCity University of Hong Kong, Massey University, Universitty of Auckland, University of Stuttgart,东Verified email at auckland.ac.nz

Dong (Walter) Xie

Department of Computer Science, University of Auckland

Verified email at cs.auckland.ac.nz - Homepage

Phylogenetics Computational Biology Bioinformatics Artificial Intelligence Machine Learning


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Bayesian phylogenetics with BEAUti and the BEAST 1.7 AJ Drummond, MA Suchard, D Xie, A Rambaut Molecular biology and evolution 29 (8), 1969-1973, 2012	10250	2012
Posterior summarization in Bayesian phylogenetics using Tracer 1.7 A Rambaut, AJ Drummond, D Xie, G Baele, MA Suchard Systematic biology 67 (5), 901-904, 2018	6191	2018
BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS computational biology 10 (4), e1003537, 2014	5681	2014
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019	2166	2019
Tracer v1. 6 A Rambaut, MA Suchard, D Xie, AJ Drummond Available from http://tree.bio.ed.ac.uk/software/tracer, 2014	1640*	2014
Estimating the basic reproductive number from viral sequence data T Stadler, R Kouyos, V von Wyl, S Yerly, J Böni, P Bürgisser, T Klimkait, ... Molecular biology and evolution 29 (1), 347-357, 2012	216	2012
Evaluating a multigene environmental DNA approach for biodiversity assessment AJ Drummond, RD Newcomb, TR Buckley, D Xie, A Dopheide, ... GigaScience 4 (1), s13742-015-0086-1, 2015	167	2015
Computational performance and statistical accuracy of* BEAST and comparisons with other methods HA Ogilvie, J Heled, D Xie, AJ Drummond Systematic biology 65 (3), 381-396, 2016	113	2016
Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity A Dopheide, D Xie, TR Buckley, AJ Drummond, RD Newcomb Methods in Ecology and Evolution 10 (1), 120-133, 2019	54	2019
Estimating the biodiversity of terrestrial invertebrates on a forested island using DNA barcodes and metabarcoding data A Dopheide, LK Tooman, S Grosser, B Agabiti, B Rhode, D Xie, ... Ecological Applications 29 (4), e01877, 2019	41	2019
Fuzzy association rules discovered on effective reduced database algorithm D Xie The 14th IEEE International Conference on Fuzzy Systems, 2005. FUZZ'05., 779-784, 2005	33	2005
Simple fuzzy logic rules based on fuzzy decision tree for classification and prediction problem JF Baldwin, D Xie Intelligent Information Processing II: IFIP TC12/WG12. 3 International …, 2005	33	2005
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations J Douglas, FK Mendes, R Bouckaert, D Xie, CL Jiménez-Silva, ... Virus evolution 7 (2), veab052, 2021	29	2021
Institute of evolutionary biology A Rambaut, M Suchard, W Xie, A Drummond Univ. Edinburgh, 2014	24	2014
Divergence dating tutorial with BEAST 2.0 AJ Drummond, A Rambaut, R Bouckaert, W Xie	18	2012
Inferring host roles in bayesian phylodynamics of global avian influenza A virus H9N2 J Yang, D Xie, Z Nie, B Xu, AJ Drummond Virology 538, 86-96, 2019	15	2019
BEAST in BEAST 2.0: Estimating Species Trees from Multilocus Data J Heled, R Bouckaert, AJ Drummond, W Xie Genetics 164, 1-18, 2013	8	2013
Object-oriented knowledge framework for modelling human mastication of foods D Xie, WL Xu, KD Foster, J Bronlund Expert Systems with Applications 36 (3), 4810-4821, 2009	7	2009
Fuzzy prototype model and semantic distance DW Xie, JF Baldwin Information Systems 32 (7), 944-967, 2007	7	2007
Tracer v. 1.6. Institute of Evolutionary Biology, University of Edinburgh. 2014 A Rambaut, M Suchard, W Xie, A Drummond	5

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