| SWISS-MODEL: homology modelling of protein structures and complexes A Waterhouse, M Bertoni, S Bienert, G Studer, G Tauriello, R Gumienny, ... Nucleic acids research 46 (W1), W296-W303, 2018 | 9745 | 2018 |
| SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information M Biasini, S Bienert, A Waterhouse, K Arnold, G Studer, T Schmidt, ... Nucleic acids research 42 (W1), W252-W258, 2014 | 5296 | 2014 |
| The SWISS-MODEL Repository—new features and functionality S Bienert, A Waterhouse, TAP De Beer, G Tauriello, G Studer, L Bordoli, ... Nucleic acids research 45 (D1), D313-D319, 2017 | 1583 | 2017 |
| QMEANDisCo—distance constraints applied on model quality estimation G Studer, C Rempfer, AM Waterhouse, R Gumienny, J Haas, T Schwede Bioinformatics 36 (6), 1765-1771, 2020 | 752 | 2020 |
| ProMod3—A versatile homology modelling toolbox G Studer, G Tauriello, S Bienert, M Biasini, N Johner, T Schwede PLoS computational biology 17 (1), e1008667, 2021 | 182 | 2021 |
| Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane) G Studer, M Biasini, T Schwede Bioinformatics 30 (17), i505-i511, 2014 | 156 | 2014 |
| Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12 J Haas, A Barbato, D Behringer, G Studer, S Roth, M Bertoni, K Mostaguir, ... Proteins: Structure, Function, and Bioinformatics 86, 387-398, 2018 | 135 | 2018 |
| OpenStructure: an integrated software framework for computational structural biology M Biasini, T Schmidt, S Bienert, V Mariani, G Studer, J Haas, N Johner, ... Acta Crystallographica Section D: Biological Crystallography 69 (5), 701-709, 2013 | 135 | 2013 |
| Estimation of model accuracy in CASP13 J Cheng, MH Choe, A Elofsson, KS Han, J Hou, AHA Maghrabi, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1361-1377, 2019 | 91 | 2019 |
| Simultaneous analysis of large-scale RNAi screens for pathogen entry P Rämö, A Drewek, C Arrieumerlou, N Beerenwinkel, H Ben-Tekaya, ... BMC genomics 15, 1-18, 2014 | 48 | 2014 |
| A comprehensive mapping of the druggable cavities within the SARS-CoV-2 therapeutically relevant proteins by combining pocket and docking searches as implemented in pockets 2.0 S Gervasoni, G Vistoli, C Talarico, C Manelfi, AR Beccari, G Studer, ... International journal of molecular sciences 21 (14), 5152, 2020 | 33 | 2020 |
| Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO) J Haas, R Gumienny, A Barbato, F Ackermann, G Tauriello, M Bertoni, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1378-1387, 2019 | 33 | 2019 |
| New prediction categories in CASP15 A Kryshtafovych, M Antczak, M Szachniuk, T Zok, RC Kretsch, R Rangan, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1550-1557, 2023 | 22 | 2023 |
| Uncovering new families and folds in the natural protein universe J Durairaj, AM Waterhouse, T Mets, T Brodiazhenko, M Abdullah, ... Nature 622 (7983), 646-653, 2023 | 21 | 2023 |
| Modeling of protein tertiary and quaternary structures based on evolutionary information G Studer, G Tauriello, S Bienert, AM Waterhouse, M Bertoni, L Bordoli, ... Computational Methods in Protein Evolution, 301-316, 2019 | 21 | 2019 |
| Assessment of protein–ligand complexes in CASP15 X Robin, G Studer, J Durairaj, J Eberhardt, T Schwede, WP Walters Proteins: Structure, Function, and Bioinformatics 91 (12), 1811-1821, 2023 | 8 | 2023 |
| What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds J Durairaj, AM Waterhouse, T Mets, T Brodiazhenko, M Abdullah, ... bioRxiv, 2023.03. 14.532539, 2023 | 7 | 2023 |
| Assessment of the assessment—All about complexes G Studer, G Tauriello, T Schwede Proteins: Structure, Function, and Bioinformatics 91 (12), 1850-1860, 2023 | 6 | 2023 |
| Embedding-based alignment: combining protein language models and alignment approaches to detect structural similarities in the twilight-zone L Pantolini, G Studer, J Pereira, J Durairaj, T Schwede bioRxiv, 2022.12. 13.520313, 2022 | 4 | 2022 |
| Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone L Pantolini, G Studer, J Pereira, J Durairaj, G Tauriello, T Schwede Bioinformatics 40 (1), btad786, 2024 | 2 | 2024 |
