Bogdan Barz
Bogdan Barz
Computational biophysicist
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Cited by
Cited by
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski’s equality
I Kosztin, B Barz, L Janosi
The Journal of chemical physics 124 (6), 064106, 2006
Dimer formation enhances structural differences between amyloid β-protein (1–40) and (1–42): an explicit-solvent molecular dynamics study
B Barz, B Urbanc
PloS one 7 (4), e34345, 2012
Pathways of amyloid-β aggregation depend on oligomer shape
B Barz, Q Liao, B Strodel
Journal of the American Chemical Society 140 (1), 319-327, 2018
MUFOLD: A new solution for protein 3D structure prediction
J Zhang, Q Wang, B Barz, Z He, I Kosztin, Y Shang, D Xu
Proteins: Structure, Function, and Bioinformatics 78 (5), 1137-1152, 2010
A kinetic approach to the sequence–aggregation relationship in disease-related protein assembly
B Barz, DJ Wales, B Strodel
The Journal of Physical Chemistry B 118 (4), 1003-1011, 2014
Early amyloid β-protein aggregation precedes conformational change
B Barz, OO Olubiyi, B Strodel
Chemical communications 50 (40), 5373-5375, 2014
Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems
E Flenner, L Janosi, B Barz, A Neagu, G Forgacs, I Kosztin
Physical Review E 85 (3), 031907, 2012
Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution
M Wolff, B Zhang-Haagen, C Decker, B Barz, M Schneider, R Biehl, ...
Scientific reports 7 (1), 1-13, 2017
Computational modeling of tissue self-assembly
A Neagu, I Kosztin, K Jakab, B Barz, M Neagu, R Jamison, G Forgacs
Modern Physics Letters B 20 (20), 1217-1231, 2006
Computational modeling of tissue self-assembly
A Neagu, I Kosztin, K Jakab, B Barz, M Neagu, R Jamison, G Forgacs
Modern Physics Letters B 20 (20), 1217-1231, 2006
Aβ under stress: the effects of acidosis, Cu 2+-binding, and oxidation on amyloid β-peptide dimers
Q Liao, MC Owen, S Bali, B Barz, B Strodel
Chemical communications 54 (56), 7766-7769, 2018
Understanding Amyloid‐β Oligomerization at the Molecular Level: The Role of the Fibril Surface
B Barz, B Strodel
Chemistry–A European Journal 22 (26), 8768-8772, 2016
Minimal model of self-assembly: emergence of diversity and complexity
B Barz, B Urbanc
The Journal of Physical Chemistry B 118 (14), 3761-3770, 2014
Computational modeling of epithelial–mesenchymal transformations
A Neagu, V Mironov, I Kosztin, B Barz, M Neagu, RA Moreno-Rodriguez, ...
Biosystems 100 (1), 23-30, 2010
Fully atomistic Aβ40 and Aβ42 oligomers in water: Observation of porelike conformations
MJ Voelker, B Barz, B Urbanc
Journal of chemical theory and computation 13 (9), 4567-4583, 2017
Conformational transitions of the Amyloid‐β peptide upon copper (II) binding and pH changes
Q Liao, MC Owen, OO Olubiyi, B Barz, B Strodel
Israel journal of chemistry 57 (7-8), 771-784, 2017
Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study
B Barz, BS Turner, R Bansil, B Urbanc
Journal of biological physics 38, 681-703, 2012
Membrane curvature and surface area per lipid affect the conformation and oligomeric state of HIV-1 fusion peptide: a combined FTIR and MD simulation study
B Barz, TC Wong, I Kosztin
Biochimica et Biophysica Acta (BBA)-Biomembranes 1778 (4), 945-953, 2008
Computational approaches for understanding dynamical systems: Protein folding and assembly
B Strodel, B Barz
Academic Press, 2020
A new x-ray line profile approximation used for the evaluation of the global nanostructure of nickel clusters
N Aldea, CV Tiusan, B Barz
Journal of Optoelectronics and Advanced Materials 6 (1), 225-235, 2004
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