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Shibasish Chowdhury
Shibasish Chowdhury
Professor of Biological Sciences
Verified email at pilani.bits-pilani.ac.in
Title
Cited by
Cited by
Year
A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculations
Y Duan, C Wu, S Chowdhury, MC Lee, G Xiong, W Zhang, R Yang, ...
Journal of computational chemistry 24 (16), 1999-2012, 2003
49482003
Ab initio folding simulation of the Trp-cage mini-protein approaches NMR resolution
S Chowdhury, MC Lee, G Xiong, Y Duan
Journal of molecular biology 327 (3), 711-717, 2003
2022003
others. 2003. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
Y Duan, C Wu, S Chowdhury, MC Lee, G Xiong, W Zhang, R Yang, ...
J. Comput. Chem 24, 1999-2012, 0
95
Characterizing the rate-limiting step of Trp-cage folding by all-atom molecular dynamics simulations
S Chowdhury, MC Lee, Y Duan
The Journal of Physical Chemistry B 108 (36), 13855-13865, 2004
752004
G-quadruplex structure can be stable with only some coordination sites being occupied by cations: a six-nanosecond molecular dynamics study
S Chowdhury, M Bansal
The Journal of Physical Chemistry B 105 (31), 7572-7578, 2001
722001
Breaking non‐native hydrophobic clusters is the rate‐limiting step in the folding of an alanine‐based peptide
S Chowdhury, W Zhang, C Wu, G Xiong, Y Duan
Biopolymers: Original Research on Biomolecules 68 (1), 63-75, 2003
652003
Dysregulated expression but redundant function of the long non-coding RNA HOTAIR in diabetic kidney disease
S Majumder, MJ Hadden, K Thieme, SN Batchu, D Niveditha, ...
Diabetologia 62, 2129-2142, 2019
452019
Fs-21 Peptides Can Form Both Single Helix and Helix− Turn− Helix
W Zhang, H Lei, S Chowdhury, Y Duan
The Journal of Physical Chemistry B 108 (22), 7479-7489, 2004
452004
Common and unique microRNAs in multiple carcinomas regulate similar network of pathways to mediate cancer progression
D Niveditha, M Jasoria, J Narayan, S Majumder, S Mukherjee, ...
Scientific Reports 10 (1), 2331, 2020
322020
Denatured-state ensemble and the early-stage folding of the G29A mutant of the B-domain of protein A
S Chowdhury, H Lei, Y Duan
The Journal of Physical Chemistry B 109 (18), 9073-9081, 2005
282005
Insecticidal and fungicidal performance of bio-fabricated silver and gold nanoparticles
A Mondal, S Chowdhury, NK Mondal, WA Shaikh, P Debnath, ...
International Journal of Environmental Science and Technology, 1-20, 2022
272022
Verteporfin disrupts multiple steps of autophagy and regulates p53 to sensitize osteosarcoma cells
H Saini, H Sharma, S Mukherjee, S Chowdhury, R Chowdhury
Cancer Cell International 21, 1-16, 2021
272021
Effect of coordinated ions on structure and flexibility of parallel G-quadruplexes: a molecular dynamics study
S Chowdhury, M Bansal
Journal of Biomolecular Structure and Dynamics 17 (6), 11-28, 2000
252000
Novel mutations in the antifolate drug resistance marker genes among Plasmodium vivax isolates exhibiting severe manifestations
S Garg, V Saxena, V Lumb, D Pakalapati, PA Boopathi, AK Subudhi, ...
Experimental Parasitology 132 (4), 410-416, 2012
242012
Autophagy regulated by gain of function mutant p53 enhances proteasomal inhibitor‐mediated cell death through induction of ROS and ERK in lung cancer cells
H Saini, I Hakeem, S Mukherjee, S Chowdhury, R Chowdhury
Journal of oncology 2019 (1), 6164807, 2019
232019
A nanosecond molecular dynamics study of antiparallel d (G) 7 quadruplex structures: effect of the coordinated cations
S Chowdhury, M Bansal
Journal of Biomolecular Structure and Dynamics 18 (5), 647-669, 2001
232001
Secondary and tertiary structure prediction of proteins: a bioinformatic approach
M Kesheri, S Kanchan, S Chowdhury, RP Sinha
Complex System Modelling and Control Through Intelligent Soft Computations …, 2015
202015
Refined template selection and combination algorithm significantly improves template-based modeling accuracy
A Runthala, S Chowdhury
Journal of Bioinformatics and Computational Biology 17 (02), 1950006, 2019
172019
Transcriptomic analysis associated with reversal of cisplatin sensitivity in drug resistant osteosarcoma cells after a drug holiday
D Niveditha, H Sharma, S Majumder, S Mukherjee, R Chowdhury, ...
Bmc Cancer 19, 1-14, 2019
152019
Interleukin-6 induced proliferation is attenuated by transforming growth factor-β-induced signaling in human hepatocellular carcinoma cells
A Srivastava, H Sharma, S Khanna, T Sadhu Balasundaram, ...
Frontiers in Oncology 11, 811941, 2022
142022
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