Dan He
Dan He
IBM T. J. Watson
Verified email at
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Optimal algorithms for haplotype assembly from whole-genome sequence data
D He, A Choi, K Pipatsrisawat, A Darwiche, E Eskin
Bioinformatics 26 (12), i183-i190, 2010
Topic dynamics: an alternative model of bursts in streams of topics
D He, DS Parker
Proceedings of the 16th ACM SIGKDD international conference on Knowledge …, 2010
Topical semantics of twitter links
MJ Welch, U Schonfeld, D He, J Cho
Proceedings of the fourth ACM international conference on Web search and …, 2011
Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction
D He, D Kuhn, L Parida
Bioinformatics 32 (12), i37-i43, 2016
Spectral clustering of large-scale data by directly solving normalized cut
X Chen, W Hong, F Nie, D He, M Yang, JZ Huang
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018
An optimal weighted aggregated association test for identification of rare variants involved in common diseases
JH Sul, B Han, D He, E Eskin
Genetics 188 (1), 181-188, 2011
Accounting for population structure in gene-by-environment interactions in genome-wide association studies using mixed models
JH Sul, M Bilow, WY Yang, E Kostem, N Furlotte, D He, E Eskin
PLoS genetics 12 (3), e1005849, 2016
Identifying genetic relatives without compromising privacy
D He, NA Furlotte, F Hormozdiari, JWJ Joo, A Wadia, R Ostrovsky, ...
Genome research 24 (4), 664-672, 2014
Cleansing noisy data streams
X Zhu, P Zhang, X Wu, D He, C Zhang, Y Shi
2008 Eighth IEEE International Conference on Data Mining, 1139-1144, 2008
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data
WY Yang, F Hormozdiari, Z Wang, D He, B Pasaniuc, E Eskin
Bioinformatics 29 (18), 2245-2252, 2013
Efficient algorithms for polyploid haplotype phasing
D He, S Saha, R Finkers, L Parida
BMC genomics 19, 171-180, 2018
MINT: mutual information based transductive feature selection for genetic trait prediction
D He, I Rish, D Haws, L Parida
IEEE/ACM transactions on computational biology and bioinformatics 13 (3 …, 2015
Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data
D He, B Han, E Eskin
Journal of Computational Biology 20 (2), 80-92, 2013
CLAP: Collaborative pattern mining for distributed information systems
X Zhu, B Li, X Wu, D He, C Zhang
Decision support systems 52 (1), 40-51, 2011
IPED: inheritance path-based pedigree reconstruction algorithm using genotype data
D He, Z Wang, B Han, L Parida, E Eskin
Journal of Computational Biology 20 (10), 780-791, 2013
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions
D He, F Hormozdiari, N Furlotte, E Eskin
Bioinformatics 27 (11), 1513-1520, 2011
SAIL-APPROX: An efficient on-line algorithm for approximate pattern matching with wildcards and length constraints
D He, X Wu, X Zhu
2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2007
Variable-selection emerges on top in empirical comparison of whole-genome complex-trait prediction methods
DC Haws, I Rish, S Teyssedre, D He, AC Lozano, P Kambadur, ...
PloS one 10 (10), e0138903, 2015
Using suffix tree to discover complex repetitive patterns in DNA sequences
D He
2006 International Conference of the IEEE Engineering in Medicine and …, 2006
Does encoding matter? A novel view on the quantitative genetic trait prediction problem
D He, L Parida
BMC bioinformatics 17, 1-9, 2016
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