|Global landscape of protein complexes in the yeast Saccharomyces cerevisiae|
NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ...
Nature 440 (7084), 637-643, 2006
|MassBank: a public repository for sharing mass spectral data for life sciences|
H Horai, M Arita, S Kanaya, Y Nihei, T Ikeda, K Suwa, Y Ojima, K Tanaka, ...
Journal of mass spectrometry 45 (7), 703-714, 2010
|Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana|
MY Hirai, M Yano, DB Goodenowe, S Kanaya, T Kimura, M Awazuhara, ...
Proceedings of the National Academy of Sciences 101 (27), 10205-10210, 2004
|Sequence-specific error profile of Illumina sequencers|
K Nakamura, T Oshima, T Morimoto, S Ikeda, H Yoshikawa, Y Shiwa, ...
Nucleic acids research 39 (13), e90-e90, 2011
|Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics|
MY Hirai, M Klein, Y Fujikawa, M Yano, DB Goodenowe, Y Yamazaki, ...
Journal of Biological Chemistry 280 (27), 25590-25595, 2005
|Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon …|
Shigehiko Kanaya, Yuko Yamada, Yoshihiro Kudo, Toshimichi Ikemura
Gene 238, 143-155, 1999
|Development and implementation of an algorithm for detection of protein complexes in large interaction networks|
M Altaf-Ul-Amin, Y Shinbo, K Mihara, K Kurokawa, S Kanaya
BMC bioinformatics 7 (1), 207, 2006
|Large-scale identification of protein–protein interaction of Escherichia coli K-12|
M Arifuzzaman, M Maeda, A Itoh, K Nishikata, C Takita, R Saito, T Ara, ...
Genome research 16 (5), 686-691, 2006
|Transcriptome analysis of all two‐component regulatory system mutants of Escherichia coli K‐12|
T Oshima, H Aiba, Y Masuda, S Kanaya, M Sugiura, BL Wanner, H Mori, ...
Molecular microbiology 46 (1), 281-291, 2002
|Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis|
S Kanaya, Y Yamada, M Kinouchi, Y Kudo, T Ikemura
Journal of molecular evolution 53 (4-5), 290-298, 2001
|KNApSAcK family databases: integrated metabolite–plant species databases for multifaceted plant research|
FM Afendi, T Okada, M Yamazaki, A Hirai-Morita, Y Nakamura, ...
Plant and Cell Physiology 53 (2), e1-e1, 2012
|The R‐type pyocin of Pseudomonas aeruginosa is related to P2 phage, and the F‐type is related to lambda phage|
K Nakayama, K Takashima, H Ishihara, T Shinomiya, M Kageyama, ...
Molecular microbiology 38 (2), 213-231, 2000
|Informatics for unveiling hidden genome signatures|
T Abe, S Kanaya, M Kinouchi, Y Ichiba, T Kozuki, T Ikemura
Genome research 13 (4), 693-702, 2003
|Metabolite annotations based on the integration of mass spectral information|
Y Iijima, Y Nakamura, Y Ogata, K Tanaka, N Sakurai, K Suda, T Suzuki, ...
The Plant Journal 54 (5), 949-962, 2008
|Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome|
S Kanaya, M Kinouchi, T Abe, Y Kudo, Y Yamada, T Nishi, H Mori, ...
Gene 276 (1-2), 89-99, 2001
|The complete nucleotide sequence of φCTX, a cytotoxin‐converting phage of Pseudomonas aeruginosa: implications for phage evolution and horizontal gene …|
K Nakayama, S Kanaya, M Ohnishi, Y Terawaki, T Hayashi
Molecular microbiology 31 (2), 399-419, 1999
|Enhanced Recombinant Protein Productivity by Genome Reduction in Bacillus subtilis|
T Morimoto, R Kadoya, K Endo, M Tohata, K Sawada, S Liu, T Ozawa, ...
DNA research 15 (2), 73-81, 2008
|KNApSAcK: a comprehensive species-metabolite relationship database|
Y Shinbo, Y Nakamura, M Altaf-Ul-Amin, H Asahi, K Kurokawa, M Arita, ...
Plant metabolomics, 165-181, 2006
|Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis|
T Horiike, K Hamada, S Kanaya, T Shinozawa
Nature Cell Biology 3 (2), 210-214, 2001
|Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies|
A Oikawa, Y Nakamura, T Ogura, A Kimura, H Suzuki, N Sakurai, ...
Plant physiology 142 (2), 398-413, 2006