IBS: an illustrator for the presentation and visualization of biological sequences W Liu, Y Xie, J Ma, X Luo, P Nie, Z Zuo, U Lahrmann, Q Zhao, Y Zheng, ... Bioinformatics 31 (20), 3359-3361, 2015 | 861 | 2015 |
GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy Y Xue, J Ren, X Gao, C Jin, L Wen, X Yao Molecular & cellular proteomics 7 (9), 1598-1608, 2008 | 793 | 2008 |
CSS-Palm 2.0: an updated software for palmitoylation sites prediction J Ren, L Wen, X Gao, C Jin, Y Xue, X Yao Protein Engineering, Design & Selection 21 (11), 639-644, 2008 | 611 | 2008 |
DOG 1.0: illustrator of protein domain structures J Ren, L Wen, X Gao, C Jin, Y Xue, X Yao Cell research 19 (2), 271-273, 2009 | 610 | 2009 |
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs Q Zhao, Y Xie, Y Zheng, S Jiang, W Liu, W Mu, Z Liu, Y Zhao, Y Xue, ... Nucleic acids research 42 (W1), W325-W330, 2014 | 536 | 2014 |
Systematic study of protein sumoylation: Development of a site‐specific predictor of SUMOsp 2.0 J Ren, X Gao, C Jin, M Zhu, X Wang, A Shaw, L Wen, X Yao, Y Xue Proteomics 9 (12), 3409-3412, 2009 | 296 | 2009 |
GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection Y Xue, Z Liu, J Cao, Q Ma, X Gao, Q Wang, C Jin, Y Zhou, L Wen, J Ren Protein Engineering, Design & Selection 24 (3), 255-260, 2011 | 292 | 2011 |
GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm Y Xue, Z Liu, X Gao, C Jin, L Wen, X Yao, J Ren PloS one 5 (6), e11290, 2010 | 280 | 2010 |
Systematic analysis of protein phosphorylation networks from phosphoproteomic data C Song, M Ye, Z Liu, H Cheng, X Jiang, G Han, Z Songyang, Y Tan, ... Molecular & Cellular Proteomics 11 (10), 1070-1083, 2012 | 197 | 2012 |
m6AVar: a database of functional variants involved in m6A modification Y Zheng, P Nie, D Peng, Z He, M Liu, Y Xie, Y Miao, Z Zuo, J Ren Nucleic acids research 46 (D1), D139-D145, 2018 | 178 | 2018 |
CPLM: a database of protein lysine modifications Z Liu, Y Wang, T Gao, Z Pan, H Cheng, Q Yang, Z Cheng, A Guo, J Ren, ... Nucleic acids research 42 (D1), D531-D536, 2014 | 172 | 2014 |
GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites Y Xie, Y Zheng, H Li, X Luo, Z He, S Cao, Y Shi, Q Zhao, Y Xue, Z Zuo, ... Scientific reports 6 (1), 28249, 2016 | 148 | 2016 |
GPS-CCD: a novel computational program for the prediction of calpain cleavage sites Z Liu, J Cao, X Gao, Q Ma, J Ren, Y Xue PLoS One 6 (4), e19001, 2011 | 124 | 2011 |
GPS-YNO2: computational prediction of tyrosine nitration sites in proteins Z Liu, J Cao, Q Ma, X Gao, J Ren, Y Xue Molecular BioSystems 7 (4), 1197-1204, 2011 | 103 | 2011 |
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation T Gao, Z Liu, Y Wang, H Cheng, Q Yang, A Guo, J Ren, Y Xue Nucleic acids research 41 (D1), D445-D451, 2013 | 101 | 2013 |
Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis J Feng, C Ding, N Qiu, X Ni, D Zhan, W Liu, X Xia, P Li, B Lu, Q Zhao, ... Nature biotechnology 35 (5), 409-412, 2017 | 88 | 2017 |
PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation J Ren, C Jiang, X Gao, Z Liu, Z Yuan, C Jin, L Wen, Z Zhang, Y Xue, ... Molecular & cellular proteomics 9 (4), 623-634, 2010 | 88 | 2010 |
Genome-wide identification of a methylation gene panel as a prognostic biomarker in nasopharyngeal carcinoma W Jiang, N Liu, XZ Chen, Y Sun, B Li, XY Ren, WF Qin, N Jiang, YF Xu, ... Molecular Cancer Therapeutics 14 (12), 2864-2873, 2015 | 87 | 2015 |
CPLA 1.0: an integrated database of protein lysine acetylation Z Liu, J Cao, X Gao, Y Zhou, L Wen, X Yang, X Yao, J Ren, Y Xue Nucleic acids research 39 (suppl_1), D1029-D1034, 2011 | 78 | 2011 |
A summary of computational resources for protein phosphorylation Y Xue, X Gao, J Cao, Z Liu, C Jin, L Wen, X Yao, J Ren Current Protein and Peptide Science 11 (6), 485-496, 2010 | 70 | 2010 |