John Quackenbush
John Quackenbush
Harvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-Farber
Verified email at hsph.harvard.edu
TitleCited byYear
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Arabidopsis Genome Initiative
nature 408 (6814), 796, 2000
90242000
TM4: a free, open-source system for microarray data management and analysis
AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ...
Biotechniques 34 (2), 374-378, 2003
45952003
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365, 2001
43392001
The complete genome sequence of the gastric pathogen Helicobacter pylori
JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ...
Nature 388 (6642), 539, 1997
38411997
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
31772005
Microarray data normalization and transformation
J Quackenbush
Nature genetics 32 (4s), 496, 2002
23912002
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ...
Nature 390 (6660), 580, 1997
22111997
Computational genetics: computational analysis of microarray data
J Quackenbush
Nature reviews genetics 2 (6), 418, 2001
19972001
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Fantom Consortium, ...
Nature 420 (6915), 563, 2002
17682002
Genesis: cluster analysis of microarray data
A Sturn, J Quackenbush, Z Trajanoski
Bioinformatics 18 (1), 207-208, 2002
17132002
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ...
Nature communications 5, 4006, 2014
16512014
[9] TM4 microarray software suite
AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ...
Methods in enzymology 411, 134-193, 2006
16152006
Corrections: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ...
Nature 394 (6688), 101, 1998
15541998
The molecular portraits of breast tumors are conserved across microarray platforms
Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, ...
BMC genomics 7 (1), 96, 2006
14982006
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, ...
Bioinformatics 19 (5), 651-652, 2003
14772003
A concise guide to cDNA microarray analysis
P Hegde, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, JE Hughes, ...
Biotechniques 29 (3), 548-562, 2000
13112000
A gene map of the human genome
GD Schuler, MS Boguski, EA Stewart, LD Stein, G Gyapay, K Rice, ...
Science 274 (5287), 540-546, 1996
12431996
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
JI Herschkowitz, K Simin, VJ Weigman, I Mikaelian, J Usary, Z Hu, ...
Genome biology 8 (5), R76, 2007
12112007
Multiple-laboratory comparison of microarray platforms
RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ...
Nature methods 2 (5), 345, 2005
9492005
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ...
Nature 419 (6906), 512, 2002
8092002
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Articles 1–20