Nagarajan Raju
Nagarajan Raju
Associate Scientist, Bioinformatics at Emory University
Verified email at - Homepage
Cited by
Cited by
Antioxidant response elements: Discovery, classes, regulation and potential applications
A Raghunath, K Sundarraj, R Nagarajan, F Arfuso, J Bian, AP Kumar, ...
Redox biology 17, 297-314, 2018
High-throughput mapping of B cell receptor sequences to antigen specificity
I Setliff, AR Shiakolas, KA Pilewski, AA Murji, RE Mapengo, K Janowska, ...
Cell 179 (7), 1636-1646. e15, 2019
Multi-donor longitudinal antibody repertoire sequencing reveals the existence of public antibody clonotypes in HIV-1 infection
I Setliff, WJ McDonnell, N Raju, RG Bombardi, AA Murji, C Scheepers, ...
Cell host & microbe 23 (6), 845-854. e6, 2018
Virus-like particles identify an HIV V1V2 apex-binding neutralizing antibody that lacks a protruding loop
EM Cale, J Gorman, NA Radakovich, ET Crooks, K Osawa, T Tong, J Li, ...
Immunity 46 (5), 777-791. e10, 2017
Do we see what we should see? Describing non-covalent interactions in protein structures including precision
M Gurusaran, M Shankar, R Nagarajan, JR Heliwell, k Sekar
IUCrJ 1 (1), 74-81, 2014
Cross-reactive coronavirus antibodies with diverse epitope specificities and Fc effector functions
AR Shiakolas, KJ Kramer, D Wrapp, SI Richardson, A Schäfer, S Wall, ...
Cell Reports Medicine 2 (6), 2021
GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies
AM Thangakani, S Kumar, R Nagarajan, D Velmurugan, MM Gromiha
Bioinformatics 30 (14), 1983-1990, 2014
Protein structural bioinformatics: an overview
MM Gromiha, R Nagarajan, S Selvaraj
Academic Press, 2019
Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine
KJ Kramer, EM Wilfong, K Voss, SM Barone, AR Shiakolas, N Raju, ...
Nature communications 13 (1), 3466, 2022
Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins
R Nagarajan, A Shandar, M Gromiha, M
Nucleic Acids Research 41 (16), 7606-7614, 2013
Efficient discovery of SARS-CoV-2-neutralizing antibodies via B cell receptor sequencing and ligand blocking
AR Shiakolas, KJ Kramer, NV Johnson, SC Wall, N Suryadevara, ...
Nature biotechnology 40 (8), 1270-1275, 2022
CPAD, curated protein aggregation database: a repository of manually curated experimental data on protein and peptide aggregation
AM Thangakani, R Nagarajan, S Kumar, R Sakthivel, D Velmurugan, ...
PLoS One 11 (4), e0152949, 2016
Computational approaches for predicting the binding sites and understanding the recognition mechanism of protein-DNA complexes
MM Gromiha, R Nagarajan
Advances in protein chemistry and structural Biology, 65-99, 2013
PDBparam: online resource for computing structural parameters of proteins
R Nagarajan, A Archana, AM Thangakani, S Jemimah, D Velmurugan, ...
Bioinformatics and Biology insights 10, BBI. S38423, 2016
Potent neutralization of SARS-CoV-2 variants of concern by an antibody with an uncommon genetic signature and structural mode of spike recognition
KJ Kramer, NV Johnson, AR Shiakolas, N Suryadevara, S Periasamy, ...
Cell Reports 37 (1), 2021
Antibacterial photosensitization through activation of coproporphyrinogen oxidase
MC Surdel, DJ Horvath Jr, LJ Lojek, AR Fullen, J Simpson, BF Dutter, ...
Proceedings of the National Academy of Sciences 114 (32), E6652-E6659, 2017
Prediction of RNA binding residues: An extensive analysis based on structure and function to select the best predictor
R Nagarajan, MM Gromiha
PLoS One 9 (3), e91140, 2014
Identification of compounds that inhibit the binding of Keap1a/Keap1b Kelch DGR domain with Nrf2 ETGE/DLG motifs in zebrafish
A Raghunath, R Nagarajan, K Sundarraj, K Palanisamy, E Perumal
Basic & Clinical Pharmacology & Toxicology 125 (3), 259-270, 2019
Genome-wide identification and analysis of Nrf2 binding sites–Antioxidant response elements in zebrafish
A Raghunath, R Nagarajan, K Sundarraj, L Panneerselvam, E Perumal
Toxicology and Applied Pharmacology 360, 236-248, 2018
Structure based approach for understanding organism specific recognition of protein-RNA complexes
R Nagarajan, SP Chothani, C Ramakrishnan, M Sekijima, MM Gromiha
Biology Direct 10 (8), 1-13, 2015
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