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Leonidas Salichos
Leonidas Salichos
Computational Biology, Yale University, New York Institute of Technology
Verified email at nyit.edu
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1641*2020
Inferring ancient divergences requires genes with strong phylogenetic signals
L Salichos, A Rokas
Nature 497 (7449), 327-331, 2013
6102013
The real cost of sequencing: scaling computation to keep pace with data generation
P Muir, S Li, S Lou, D Wang, DJ Spakowicz, L Salichos, J Zhang, ...
Genome biology 17, 1-9, 2016
4812016
Novel information theory-based measures for quantifying incongruence among phylogenetic trees
L Salichos, A Stamatakis, A Rokas
Molecular biology and evolution 31 (5), 1261-1271, 2014
2602014
The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae
JG Gibbons, L Salichos, JC Slot, DC Rinker, KL McGary, JG King, ...
Current Biology 22 (15), 1403-1409, 2012
1872012
Transcriptome-wide analysis of small RNA expression in early zebrafish development
C Wei, L Salichos, CM Wittgrove, A Rokas, JG Patton
Rna 18 (5), 915-929, 2012
1172012
Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell 180 (5), 915-927. e16, 2020
1142020
Complete Bacteriophage Transfer in a Bacterial Endosymbiont (Wolbachia) Determined by Targeted Genome Capture
BN Kent, L Salichos, JG Gibbons, A Rokas, ILG Newton, ME Clark, ...
Genome biology and evolution 3, 209-218, 2011
1072011
Evaluating ortholog prediction algorithms in a yeast model clade
L Salichos, A Rokas
PloS one 6 (4), e18755, 2011
1012011
The diversity and evolution of circadian clock proteins in fungi
L Salichos, A Rokas
Mycologia 102 (2), 269-278, 2010
832010
Computing the internode certainty and related measures from partial gene trees
K Kobert, L Salichos, A Rokas, A Stamatakis
Molecular Biology and Evolution 33 (6), 1606-1617, 2016
762016
A genome-scale investigation of how sequence, function, and tree-based gene properties influence phylogenetic inference
XX Shen, L Salichos, A Rokas
Genome Biology and Evolution 8 (8), 2565-2580, 2016
702016
Combined burden and functional impact tests for cancer driver discovery using DriverPower
S Shuai, S Gallinger, LD Stein
Nature communications 11 (1), 734, 2020
372020
Alpha, Beta, gamma human PapillomaViruses (HPV) detection with a different sets of primers in oropharyngeal swabs, anal and cervical samples
C Sias, L Salichos, D Lapa, F Del Nonno, A Baiocchini, MR Capobianchi, ...
Virology journal 16, 1-10, 2019
272019
Estimating growth patterns and driver effects in tumor evolution from individual samples
L Salichos, W Meyerson, J Warrell, M Gerstein
Nature communications 11 (1), 732, 2020
262020
Impact of viral selected mutations on T cell mediated immunity in chronically evolving and self limiting acute HCV infection
S Guglietta, AR Garbuglia, L Salichos, L Ruggeri, A Folgori, MP Perrone, ...
Virology 386 (2), 398-406, 2009
182009
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ...
Cell 186 (7), 1493-1511. e40, 2023
152023
Proteome-wide screening for mitogen-activated protein kinase docking motifs and interactors
G Shi, C Song, J Torres Robles, L Salichos, HJ Lou, TKT Lam, M Gerstein, ...
Science signaling 16 (767), eabm5518, 2023
102023
Multi-tissue integrative analysis of personal epigenomes
J Rozowsky, J Drenkow, Y Yang, G Gursoy, T Galeev, B Borsari, ...
BioRxiv, 2021
72021
Phylogenetic and Phylodynamic Analyses of HCV Strains Circulating among Patients Using Injectable Drugs in Central Italy
C Minosse, L Salichos, C Taibi, I Luzzitelli, D Nardozi, MR Capobianchi, ...
Microorganisms 9 (7), 1432, 2021
62021
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