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J. Alexander Bae
J. Alexander Bae
Postdoctoral Fellow, Seoul National University
Verified email at snu.ac.kr - Homepage
Title
Cited by
Cited by
Year
Digital museum of retinal ganglion cells with dense anatomy and physiology
JA Bae, S Mu, JS Kim, NL Turner, I Tartavull, N Kemnitz, CS Jordan, ...
Cell 173 (5), 1293-1306. e19, 2018
2182018
FlyWire: online community for whole-brain connectomics
S Dorkenwald, CE McKellar, T Macrina, N Kemnitz, K Lee, R Lu, J Wu, ...
Nature methods 19 (1), 119-128, 2022
1532022
Functional connectomics spanning multiple areas of mouse visual cortex
MICrONS Consortium, JA Bae, M Baptiste, CA Bishop, AL Bodor, ...
BioRxiv, 2021.07. 28.454025, 2021
1112021
Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity
NL Turner, T Macrina, JA Bae, R Yang, AM Wilson, C Schneider-Mizell, ...
Cell 185 (6), 1082-1100. e24, 2022
922022
Neuronal wiring diagram of an adult brain
S Dorkenwald, A Matsliah, AR Sterling, P Schlegel, SC Yu, CE McKellar, ...
bioRxiv, 2023
532023
Multiscale and multimodal reconstruction of cortical structure and function
NL Turner, T Macrina, JA Bae, R Yang, AM Wilson, C Schneider-Mizell, ...
Biorxiv, 2020.10. 14.338681, 2020
402020
Petascale neural circuit reconstruction: automated methods
T Macrina, K Lee, R Lu, NL Turner, J Wu, S Popovych, W Silversmith, ...
bioRxiv, 2021.08. 04.455162, 2021
302021
Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
CM Schneider-Mizell, A Bodor, D Brittain, JA Buchanan, DJ Bumbarger, ...
bioRxiv, 2023
242023
Axonem dataset: 3d axon instance segmentation of brain cortical regions
D Wei, K Lee, H Li, R Lu, JA Bae, Z Liu, L Zhang, M dos Santos, Z Lin, ...
Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th …, 2021
162021
Kimimaro: Skeletonize densely labeled 3D image segmentations
W Silversmith, JA Bae, PH Li, AM Wilson
Zenodo https://doi. org/10.5281/zenodo 5539912, 2021
112021
Quantitative census of local somatic features in mouse visual cortex
L Elabbady, S Seshamani, S Mu, G Mahalingam, C Schneider-Mizell, ...
bioRxiv, 2022.07. 20.499976, 2022
102022
Functional connectomics reveals general wiring rule in mouse visual cortex
Z Ding, PG Fahey, S Papadopoulos, EY Wang, B Celii, C Papadopoulos, ...
bioRxiv, 2023
92023
seung-lab/kimimaro: Zenodo Release v1
W Silversmith, JA Bae, PH Li, AM Wilson
Zenodo doi 10, 2021
82021
CAVE: Connectome annotation versioning engine
S Dorkenwald, CM Schneider-Mizell, D Brittain, A Halageri, C Jordan, ...
bioRxiv, 2023
72023
Petascale pipeline for precise alignment of images from serial section electron microscopy
S Popovych, T Macrina, N Kemnitz, M Castro, B Nehoran, Z Jia, JA Bae, ...
Nature communications 15 (1), 289, 2024
62024
NEURD: automated proofreading and feature extraction for connectomics
B Celii, S Papadopoulos, Z Ding, PG Fahey, E Wang, C Papadopoulos, ...
BioRxiv, 2023
62023
Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types
CR Gamlin, CM Schneider-Mizell, M Mallory, L Elabbady, N Gouwens, ...
bioRxiv, 2023.03. 22.533857, 2023
62023
NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
B Celii, S Papadopoulos, Z Ding, PG Fahey, E Wang, C Papadopoulos, ...
bioRxiv, 2023.03. 14.532674, 2023
62023
An unsupervised map of excitatory neurons’ dendritic morphology in the mouse visual cortex
MA Weis, S Papadopoulos, L Hansel, T Lüddecke, B Celii, PG Fahey, ...
bioRxiv, 2022.12. 22.521541, 2022
52022
Caesar: segment-wise alignment method for solving discontinuous deformations
S Popovych, JA Bae, HS Seung
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 1214-1218, 2020
52020
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