Stefano piana
Stefano piana
Research Fellow, DE Shaw Research
Verified email at deshaw.com
Title
Cited by
Cited by
Year
Improved side‐chain torsion potentials for the Amber ff99SB protein force field
K Lindorff‐Larsen, S Piana, K Palmo, P Maragakis, JL Klepeis, RO Dror, ...
Proteins: Structure, Function, and Bioinformatics 78 (8), 1950-1958, 2010
37522010
Atomic-level characterization of the structural dynamics of proteins
DE Shaw, P Maragakis, K Lindorff-Larsen, S Piana, RO Dror, ...
Science 330 (6002), 341-346, 2010
16982010
How fast-folding proteins fold
K Lindorff-Larsen, S Piana, RO Dror, DE Shaw
Science 334 (6055), 517-520, 2011
15812011
How robust are protein folding simulations with respect to force field parameterization?
S Piana, K Lindorff-Larsen, DE Shaw
Biophysical journal 100 (9), L47-L49, 2011
7172011
Systematic Validation of Protein Force Fields against Experimental Data
K Lindorff-Larsen, P Maragakis, S Piana, MP Eastwood, RO Dror, ...
PloS one 7 (2), e32131, 2012
6242012
Millisecond-scale molecular dynamics simulations on Anton
DE Shaw, RO Dror, JK Salmon, JP Grossman, KM Mackenzie, JA Bank, ...
Proceedings of the conference on high performance computing networkingá…, 2009
5612009
A bias-exchange approach to protein folding
S Piana, A Laio
The journal of physical chemistry B 111 (17), 4553-4559, 2007
5172007
Water dispersion interactions strongly influence simulated structural properties of disordered protein states
S Piana, AG Donchev, P Robustelli, DE Shaw
The journal of physical chemistry B 119 (16), 5113-5123, 2015
4842015
Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations
S Piana, JL Klepeis, DE Shaw
Current opinion in structural biology 24, 98-105, 2014
4112014
Developing a molecular dynamics force field for both folded and disordered protein states
P Robustelli, S Piana, DE Shaw
Proceedings of the National Academy of Sciences 115 (21), E4758-E4766, 2018
3672018
Identification of two distinct inactive conformations of the β2-adrenergic receptor reconciles structural and biochemical observations
RO Dror, DH Arlow, DW Borhani, Mě Jensen, S Piana, DE Shaw
Proceedings of the National Academy of Sciences 106 (12), 4689-4694, 2009
3112009
Atomic-level description of ubiquitin folding
S Piana, K Lindorff-Larsen, DE Shaw
Proceedings of the National Academy of Sciences 110 (15), 5915-5920, 2013
3062013
A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations
F Marinelli, F Pietrucci, A Laio, S Piana
PLoS Comput Biol 5 (8), e1000452, 2009
2872009
Refinement of protein structure homology models via long, all‐atom molecular dynamics simulations
A Raval, S Piana, MP Eastwood, RO Dror, DE Shaw
Proteins: Structure, Function, and Bioinformatics 80 (8), 2071-2079, 2012
2732012
Protein folding kinetics and thermodynamics from atomistic simulation
S Piana, K Lindorff-Larsen, DE Shaw
Proceedings of the National Academy of Sciences 109 (44), 17845-17850, 2012
2542012
Structure and dynamics of an unfolded protein examined by molecular dynamics simulation
K Lindorff-Larsen, N Trbovic, P Maragakis, S Piana, DE Shaw
Journal of the American Chemical Society 134 (8), 3787-3791, 2012
2382012
Simulating micrometre-scale crystal growth from solution
S Piana, M Reyhani, JD Gale
Nature 438 (7064), 70-73, 2005
2072005
Role of conformational fluctuations in the enzymatic reaction of HIV-1 protease
S Piana, P Carloni, M Parrinello
Journal of molecular biology 319 (2), 567-583, 2002
1672002
Structural origin of slow diffusion in protein folding
HS Chung, S Piana-Agostinetti, DE Shaw, WA Eaton
Science 349 (6255), 1504-1510, 2015
1632015
Drug resistance in HIV‐1 protease: flexibility‐assisted mechanism of compensatory mutations
S Piana, P Carloni, U Rothlisberger
Protein Science 11 (10), 2393-2402, 2002
1542002
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Articles 1–20