| DNA topology and geometry in Flp and Cre recombination AA Vetcher, AY Lushnikov, J Navarra-Madsen, RG Scharein, ... Journal of molecular biology 357 (4), 1089-1104, 2006 | 72 | 2006 |
| Biological distances on DNA knots and links: applications to XER recombination IK Darcy Journal of knot theory and its ramifications 10 (02), 269-294, 2001 | 65 | 2001 |
| Rational tangle distances on knots and links IK Darcy, S DE WITT Mathematical Proceedings of the Cambridge Philosophical Society 128 (3), 497-510, 2000 | 52 | 2000 |
| A strand passage metric for topoisomerase action I Darcy, DW Sumners Knots 96, 267-278, 1997 | 45 | 1997 |
| Applications of topological data analysis in oncology A Bukkuri, N Andor, IK Darcy Frontiers in artificial intelligence 4, 659037, 2021 | 41 | 2021 |
| Solving unoriented tangle equations involving 4-plats IK Darcy Journal of knot theory and its ramifications 14 (08), 993-1005, 2005 | 38 | 2005 |
| Coloring the Mu transpososome IK Darcy, J Chang, N Druivenga, C McKinney, RK Medikonduri, S Mills, ... BMC bioinformatics 7, 1-19, 2006 | 31 | 2006 |
| TopoICE-R: 3D visualization modeling the topology of DNA recombination IK Darcy, RG Scharein Bioinformatics 22 (14), 1790-1791, 2006 | 31 | 2006 |
| Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex I Darcy, J Luecke, M Vazquez Algebraic & geometric topology 9 (4), 2247-2309, 2009 | 29 | 2009 |
| Applications of topology to DNA I Darcy, D Sumners Banach Center Publications 42 (1), 65-75, 1998 | 24 | 1998 |
| Tracing patterns and shapes in remittance and migration networks via persistent homology PSP Ignacio, IK Darcy EPJ Data science 8 (1), 1, 2019 | 22 | 2019 |
| 3D visualization software to analyze topological outcomes of topoisomerase reactions IK Darcy, RG Scharein, A Stasiak Nucleic acids research 36 (11), 3515-3521, 2008 | 21 | 2008 |
| Rational tangle surgery and Xer recombination on catenanes IK Darcy, K Ishihara, RK Medikonduri, K Shimokawa Algebraic & Geometric Topology 12 (2), 1183-1210, 2012 | 19 | 2012 |
| Modeling protein–DNA complexes with tangles IK Darcy Computers & Mathematics with Applications 55 (5), 924-937, 2008 | 18 | 2008 |
| Determining the topology of stable protein–DNA complexes IK Darcy, M Vazquez Biochemical Society Transactions 41 (2), 601-605, 2013 | 15 | 2013 |
| Topological analysis of DNA-protein complexes S Kim, IK Darcy Mathematics of DNA structure, function and interactions, 177-194, 2009 | 11 | 2009 |
| Biological metrics on DNA knots and catenanes IK Darcy The Florida State University, 1997 | 10 | 1997 |
| Pseudo-multidimensional persistence and its applications C Betancourt, M Chalifour, R Neville, M Pietrosanu, M Tsuruga, I Darcy, ... Research in Computational Topology, 179-202, 2018 | 5 | 2018 |
| In Suzuki, S IK Darcy, DW Sumners Knots’ 96: Proceedings of the Fifth International Research Institute of …, 1997 | 5 | 1997 |
| Introduction to DNA topology IK Darcy, SD Levene, RG Scharein Discrete and topological models in molecular biology, 327-345, 2013 | 4 | 2013 |
