| Theory for transitions between exponential and stationary phases: universal laws for lag time Y Himeoka, K Kaneko Physical Review X 7 (2), 021049, 2017 | 53 | 2017 |
| Entropy production of a steady-growth cell with catalytic reactions Y Himeoka, K Kaneko Physical Review E 90 (4), 042714, 2014 | 22 | 2014 |
| Dynamics of bacterial populations under the feast-famine cycles Y Himeoka, N Mitarai Physical Review Research 2 (1), 013372, 2020 | 20 | 2020 |
| When to wake up? The optimal waking-up strategies for starvation-induced persistence Y Himeoka, N Mitarai PLoS computational biology 17 (2), e1008655, 2021 | 10 | 2021 |
| Enzyme oscillation can enhance the thermodynamic efficiency of cellular metabolism: consequence of anti-phase coupling between reaction flux and affinity Y Himeoka, K Kaneko Physical biology 13 (2), 026002, 2016 | 8 | 2016 |
| Distinct survival, growth lag, and rRNA degradation kinetics during long-term starvation for carbon or phosphate Y Himeoka, B Gummesson, MA Sørensen, SL Svenningsen, N Mitarai Msphere 7 (3), e01006-21, 2022 | 7 | 2022 |
| Modeling slow-processing of toxin messenger RNAs in type-I toxin–antitoxin systems: Post-segregational killing and noise filtering Y Himeoka, N Mitarai Physical Biology 16 (2), 026001, 2019 | 4 | 2019 |
| Emergence of growth and dormancy from a kinetic model of the Escherichia coli central carbon metabolism Y Himeoka, N Mitarai Physical Review Research 4 (4), 043223, 2022 | 3 | 2022 |
| Epigenetic Ratchet: Spontaneous adaptation via stochastic gene expression Y Himeoka, K Kaneko Scientific Reports 10 (1), 459, 2020 | 3 | 2020 |
| Stoichiometric Rays: A simple method to compute the controllable set of enzymatic reaction systems Y Himeoka, SA Horiguchi, TJ Kobayashi bioRxiv, 2024.03. 04.583348, 2024 | | 2024 |
| Evolution of hierarchy and irreversibility in theoretical cell differentiation model YT Nakamura, Y Himeoka, N Saito, C Furusawa PNAS nexus 3 (1), pgad454, 2024 | | 2024 |
| Perturbation-response analysis of in silico metabolic dynamics: Hard-coded responsiveness in the cofactors and network sparsity Y Himeoka, C Furusawa bioRxiv, 2023.10. 18.562862, 2023 | | 2023 |
| Structural determinants of relaxation dynamics in chemical reaction networks Y Himeoka, JB Kirkegaard, N Mitarai, S Krishna bioRxiv, 2022.05. 25.493374, 2022 | | 2022 |
Namiko MitaraiAssociate Professor, Niels Bohr Institute, University of CopenhagenVerified email at nbi.dk
