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Thomas Huber
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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Applied and environmental microbiology 72 (7), 5069-5072, 2006
115172006
The GROMOS biomolecular simulation program package
WRP Scott, PH Hünenberger, IG Tironi, AE Mark, SR Billeter, J Fennen, ...
The Journal of Physical Chemistry A 103 (19), 3596-3607, 1999
18431999
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
T Huber, G Faulkner, P Hugenholtz
Bioinformatics 20 (14), 2317-2319, 2004
18062004
Local elevation: a method for improving the searching properties of molecular dynamics simulation
T Huber, AE Torda, WF Van Gunsteren
Journal of computer-aided molecular design 8, 695-708, 1994
6221994
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5502020
Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases
P Hugenholtz, T Huber
International journal of systematic and evolutionary microbiology 53 (1 …, 2003
2932003
Numbat: an interactive software tool for fitting Δχ-tensors to molecular coordinates using pseudocontact shifts
C Schmitz, MJ Stanton-Cook, XC Su, G Otting, T Huber
Journal of biomolecular NMR 41, 179-189, 2008
1952008
Nanometer-Scale Distance Measurements in Proteins Using Gd3+ Spin Labeling
A Potapov, H Yagi, T Huber, S Jergic, NE Dixon, G Otting, D Goldfarb
Journal of the American Chemical Society 132 (26), 9040-9048, 2010
1692010
Structure refinement using time-averaged J-coupling constant restraints
AE Torda, RM Brunne, T Huber, H Kessler, WF van Gunsteren
Journal of biomolecular NMR 3, 55-66, 1993
1451993
A dipicolinic acid tag for rigid lanthanide tagging of proteins and paramagnetic NMR spectroscopy
XC Su, B Man, S Beeren, H Liang, S Simonsen, C Schmitz, T Huber, ...
Journal of the American Chemical Society 130 (32), 10486-10487, 2008
1442008
Binding of low molecular weight inhibitors promotes large conformational changes in the dengue virus NS2B-NS3 protease: fold analysis by pseudocontact shifts
L de la Cruz, THD Nguyen, K Ozawa, J Shin, B Graham, T Huber, G Otting
Journal of the American Chemical Society 133 (47), 19205-19215, 2011
1362011
Gadolinium tagging for high-precision measurements of 6 nm distances in protein assemblies by EPR
H Yagi, D Banerjee, B Graham, T Huber, D Goldfarb, G Otting
Journal of the American Chemical Society 133 (27), 10418-10421, 2011
1362011
DOTA-amide lanthanide tag for reliable generation of pseudocontact shifts in protein NMR spectra
B Graham, CT Loh, JD Swarbrick, P Ung, J Shin, H Yagi, X Jia, S Chhabra, ...
Bioconjugate chemistry 22 (10), 2118-2125, 2011
1342011
Protein structure determination from pseudocontact shifts using ROSETTA
C Schmitz, R Vernon, G Otting, D Baker, T Huber
Journal of molecular biology 416 (5), 668-677, 2012
1322012
Multiple‐site labeling of proteins with unnatural amino acids
KV Loscha, AJ Herlt, R Qi, T Huber, K Ozawa, G Otting
Angewandte Chemie International Edition 51 (9), 2243-2246, 2012
1262012
Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome
T Ravasi, T Huber, M Zavolan, A Forrest, T Gaasterland, S Grimmond, ...
Genome research 13 (6b), 1430-1442, 2003
1252003
Lanthanide-binding peptides for NMR measurements of residual dipolar couplings and paramagnetic effects from multiple angles
XC Su, K McAndrew, T Huber, G Otting
Journal of the American Chemical Society 130 (5), 1681-1687, 2008
1222008
Site‐specific labelling of proteins with a rigid lanthanide‐binding tag
XC Su, T Huber, NE Dixon, G Otting
ChemBioChem 7 (10), 1599-1604, 2006
1222006
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
J Song, K Burrage, Z Yuan, T Huber
BMC bioinformatics 7, 1-13, 2006
1142006
3D structure determination of a protein in living cells using paramagnetic NMR spectroscopy
BB Pan, F Yang, Y Ye, Q Wu, C Li, T Huber, XC Su
Chemical Communications 52 (67), 10237-10240, 2016
1082016
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