Oleg Tsodikov
Title
Cited by
Cited by
Year
Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
OV Tsodikov, MT Record, Jr, YV Sergeev
Journal of Computational. Chemistry 23, 600-609, 2002
4112002
New insights into fluoroquinolone resistance in Mycobacterium tuberculosis: functional genetic analysis of gyrA and gyrB mutations
S Malik, M Willby, D Sikes, OV Tsodikov, JE Posey
PloS one 7 (6), e39754, 2012
1782012
Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF–ERCC1
OV Tsodikov, JH Enzlin, OD Schärer, T Ellenberger
Proceedings of the National Academy of Sciences 102 (32), 11236-11241, 2005
1662005
Structural basis for the recruitment of ERCC1‐XPF to nucleotide excision repair complexes by XPA
OV Tsodikov, D Ivanov, B Orelli, L Staresincic, I Shoshani, R Oberman, ...
The EMBO journal 26 (22), 4768-4776, 2007
1612007
A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA
JM Pascal, OV Tsodikov, GL Hura, W Song, EA Cotner, S Classen, ...
Molecular cell 24 (2), 279-291, 2006
1442006
DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and …
ML Craig, OV Tsodikov, KL McQuade, PE Schlax Jr, MW Capp, ...
Journal of molecular biology 283 (4), 741-756, 1998
1321998
Kinetic studies and structural models of the association of E. coli σ70 RNA polymerase with the λPR promoter: large scale conformational changes in forming the kinetically …
RM Saecker, OV Tsodikov, KL McQuade, PE Schlax Jr, MW Capp, ...
Journal of molecular biology 319 (3), 649-671, 2002
1312002
Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site
DE Frank, RM Saecker, JP Bond, MW Capp, OV Tsodikov, SE Melcher, ...
Journal of molecular biology 267 (5), 1186-1206, 1997
1301997
Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding
JA Holbrook, OV Tsodikov, RM Saecker, MT Record Jr
Journal of molecular biology 310 (2), 379-401, 2001
1272001
The XPA-binding domain of ERCC1 is required for nucleotide excision repair but not other DNA repair pathways
B Orelli, TB McClendon, OV Tsodikov, T Ellenberger, LJ Niedernhofer, ...
Journal of Biological Chemistry 285 (6), 3705-3712, 2010
1192010
Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB
W Chen, T Biswas, VR Porter, OV Tsodikov, S Garneau-Tsodikova
Proceedings of the National Academy of Sciences 108 (24), 9804-9808, 2011
1102011
Domain-swapped dimerization of the HIV-1 capsid C-terminal domain
D Ivanov, OV Tsodikov, J Kasanov, T Ellenberger, G Wagner, T Collins
Proceedings of the National Academy of Sciences 104 (11), 4353-4358, 2007
1092007
Quantitative analysis of the kinetics of end-dependent disassembly of RecA filaments from ssDNA
TA Arenson, OV Tsodikov, MM Cox
Journal of molecular biology 288 (3), 391-401, 1999
881999
Organized unidirectional waves of ATP hydrolysis within a RecA filament
JM Cox, OV Tsodikov, MM Cox
PLoS Biol 3 (2), e52, 2005
782005
Data publication with the structural biology data grid supports live analysis
PA Meyer, S Socias, J Key, E Ransey, EC Tjon, A Buschiazzo, M Lei, ...
Nature communications 7 (1), 1-12, 2016
732016
Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer
OV Tsodikov, JA Holbrook, IA Shkel, MT Record Jr
Biophysical journal 81 (4), 1960-1969, 2001
732001
Survival in nuclear waste, extreme resistance, and potential applications gleaned from the genome sequence of Kineococcus radiotolerans SRS30216
CE Bagwell, S Bhat, GM Hawkins, BW Smith, T Biswas, TR Hoover, ...
PloS one 3 (12), e3878, 2008
662008
A nonradioactive high-throughput assay for screening and characterization of adenylation domains for nonribosomal peptide combinatorial biosynthesis
TJ McQuade, AD Shallop, A Sheoran, JE DelProposto, OV Tsodikov, ...
Analytical biochemistry 386 (2), 244-250, 2009
652009
Quantifying additive interactions of the osmolyte proline with individual functional groups of proteins: comparisons with urea and glycine betaine, interpretation of m-values
RC Diehl, EJ Guinn, MW Capp, OV Tsodikov, MT Record Jr
Biochemistry 52 (35), 5997-6010, 2013
562013
Cooperative and anticooperative effects in binding of the first and second plasmid OsymOperators to a LacI tetramer: evidence for contributions of non-operator DNA binding by …
MM Levandoski, OV Tsodikov, DE Frank, SE Melcher, RM Saecker, ...
Journal of molecular biology 260 (5), 697-717, 1996
511996
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