Michael Nicholson

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Tibor AntalSchool of Mathematics, University of EdinburghVerified email at ed.ac.uk
Bartlomiej WaclawReader, School of Physics, University of EdinburghVerified email at staffmail.ed.ac.uk
Martin S. TaylorProfessor, MRC Human Genetics Unit, Institute of Genetics and Cancer, University of EdinburghVerified email at ed.ac.uk
Claire PallesUniversity of BirminghamVerified email at bham.ac.uk
Tatjana StankovicProfessor of Cancer GeneticsVerified email at bham.ac.uk
David ParryUniversity of EdinburghVerified email at ed.ac.uk
Martin Carballo PachecoHoxton FarmsVerified email at hoxtonfarms.com
Franziska MichorAssociate Professor of Biostatistics, Harvard UniversityVerified email at jimmy.harvard.edu
Martin ReijnsSenior Postdoctoral Researcher, The University of EdinburghVerified email at ed.ac.uk
Thomas Christie WilliamsWellcome Trust ECAT Clinical LecturerVerified email at exseed.ed.ac.uk
Lukas EndlerCeMM, Research Center for Molecular Medicine of the Austrian Academy of SciencesVerified email at cemm.oeaw.ac.at
Andreas BergthalerMedical University of Vienna // CeMM, Austrian Academy of SciencesVerified email at meduniwien.ac.at
Jakob-Wendelin GengerPhD Student, Bergthaler Lab at CeMM Research Center for Molecular Medicine of the Austrian Academy of SciencesVerified email at cemm.oeaw.ac.at
Rachael KirkbrideResearch Fellow, Beth Israel Deaconess Medical CenterVerified email at bidmc.harvard.edu
Rokas LiubauskasClinical research fellow, Beth Israel Deaconess Medical CenterVerified email at bidmc.harvard.edu
Duncan T OdomUniversity of Heidelberg & German Cancer Research Center/DKFZVerified email at dkfz-heidelberg.de
Colin SempleProfessor/Head of Bioinformatics, MRC Human Genetics Unit, University of EdinburghVerified email at ed.ac.uk
Sarah J AitkenMRC Toxicology Unit | CRUK Cambridge Institute | University of CambridgeVerified email at cam.ac.uk
Nuria Lopez-BigasICREA Research Professor at the Institute for Research in BiomedicineVerified email at irbbarcelona.org
Paul FlicekUniversity of Cambridge, Wellcome Sanger Institute, European Bioinformatics InstituteVerified email at cam.ac.uk

Michael Nicholson

Institute of Genetics and Cancer, University of Edinburgh

Verified email at ed.ac.uk

Mathematical Biology Computational Biology Cancer Research


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Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2 A Popa, JW Genger, MD Nicholson, T Penz, D Schmid, SW Aberle, ... Science translational medicine 12 (573), eabe2555, 2020	181	2020
Breast tumours maintain a reservoir of subclonal diversity during expansion DC Minussi, MD Nicholson, H Ye, A Davis, K Wang, T Baker, M Tarabichi, ... Nature 592 (7853), 302-308, 2021	85	2021
Universal asymptotic clone size distribution for general population growth MD Nicholson, T Antal Bulletin of Mathematical Biology 78, 2243-2276, 2016	22	2016
Competing evolutionary paths in growing populations with applications to multidrug resistance MD Nicholson, T Antal PLoS computational biology 15 (4), e1006866, 2019	15	2019
Signatures of TOP1 transcription-associated mutagenesis in cancer and germline MAM Reijns, DA Parry, TC Williams, F Nadeu, RL Hindshaw, ... Nature 602 (7898), 623-631, 2022	10	2022
Mutational dynamics and transmission properties of SARS-CoV-2 superspreading events in Austria A Popa, JW Genger, M Nicholson, T Penz, D Schmid, SW Aberle, ... bioRxiv, 2020.07. 15.204339, 2020	9	2020
Phenotypic delay in the evolution of bacterial antibiotic resistance: mechanistic models and their implications M Carballo-Pacheco, MD Nicholson, EE Lilja, RJ Allen, B Waclaw PLoS computational biology 16 (5), e1007930, 2020	7	2020
Response to comment on “Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2” MD Nicholson, L Endler, A Popa, JW Genger, C Bock, F Michor, ... Science Translational Medicine 13 (617), eabj3222, 2021	4	2021
Strand-resolved mutagenicity of DNA damage and repair CJ Anderson, L Talmane, J Luft, MD Nicholson, J Connelly, O Pich, ... BioRxiv, 2022.06. 10.495644, 2022	2	2022
Quality and diagnostic performance of coronary computed tomography angiogram (CCTA): A comparison between pre-liver and pre-kidney transplant patients RR Kirkbride, E Larkin, MK Tuttle, MD Nicholson, BG Jiang, R Liubauskas, ... European Journal of Radiology 143, 109886, 2021	2	2021
Importance sampling under the coalescent with times and variable population M Ye, S Nielsen, M Nicholson, Y Teh, P Jenkins, F Colchester, ... URL https://www. stats. ox. ac. uk/__data/assets/pdf_file/0007/9889 …, 2013	1	2013
Mutation accumulation in exponentially growing populations MD Nicholson, D Cheek, T Antal arXiv preprint arXiv:2208.02088, 2022		2022
Abstract PO-133: Breast tumors maintain a reservoir of subclonal diversity during primary expansion DC Minussi, M Nicholson, H Ye, A Davis, K Wang, E Sei, H Du, ... Cancer Research 80 (21_Supplement), PO-133-PO-133, 2020		2020
Applications of branching processes to cancer evolution and initiation MD Nicholson The University of Edinburgh, 2018		2018
Exploiting Homeostatic Repopulation to Increase DC Vaccine Efficacy in Multiple Myeloma CD Gatenbee, N Folguera-Blasco, C Daneils, J Gallaher, RC Rockne, ... bioRxiv, 049072, 2016		2016
Supplementary information Phenotypic delay in the evolution of bacterial antibiotic resistance: mechanistic models and their implications M Carballo-Pacheco, MD Nicholson, EE Lilja, RJ Allen, B Waclaw
Supplementary material for competing evolutionary paths in growing populations with applications to multidrug resistance MD Nicholson, T Antal
Phenotypic delay: mechanistic models and their implications for the evolution of resistance to antibiotics M Carballo-Pacheco, MD Nicholson, EE Lilja, RJ Allen, B Waclaw

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