Karthik Shekhar
Karthik Shekhar
Postdoctoral Associate, Broad Institute
Verified email at broadinstitute.org - Homepage
TitleCited byYear
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
EZ Macosko, A Basu, R Satija, J Nemesh, K Shekhar, M Goldman, I Tirosh, ...
Cell 161 (5), 1202-1214, 2015
22392015
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
AC Villani, R Satija, G Reynolds, S Sarkizova, K Shekhar, J Fletcher, ...
Science 356 (6335), eaah4573, 2017
5682017
Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys
DH Barouch, JB Whitney, B Moldt, F Klein, TY Oliveira, J Liu, ...
Nature 503 (7475), 224, 2013
5582013
Comprehensive classification of retinal bipolar neurons by single-cell transcriptomics
K Shekhar, SW Lapan, IE Whitney, NM Tran, EZ Macosko, M Kowalczyk, ...
Cell 166 (5), 1308-1323. e30, 2016
4022016
A single-cell survey of the small intestinal epithelium
AL Haber, M Biton, N Rogel, RH Herbst, K Shekhar, C Smillie, G Burgin, ...
Nature 551 (7680), 333, 2017
2312017
Massively parallel single-nucleus RNA-seq with DroNc-seq
N Habib, I Avraham-Davidi, A Basu, T Burks, K Shekhar, M Hofree, ...
Nature methods 14 (10), 955, 2017
2002017
Coordinate linkage of HIV evolution reveals regions of immunological vulnerability
V Dahirel, K Shekhar, F Pereyra, T Miura, M Artyomov, S Talsania, ...
Proceedings of the National Academy of Sciences 108 (28), 11530-11535, 2011
1662011
Coordinate linkage of HIV evolution reveals regions of immunological vulnerability
V Dahirel, K Shekhar, F Pereyra, T Miura, M Artyomov, S Talsania, ...
Proceedings of the National Academy of Sciences 108 (28), 11530-11535, 2011
1662011
Automatic classification of cellular expression by nonlinear stochastic embedding (ACCENSE)
K Shekhar, P Brodin, MM Davis, AK Chakraborty
Proceedings of the National Academy of Sciences 111 (1), 202-207, 2014
1632014
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
JA Farrell, Y Wang, SJ Riesenfeld, K Shekhar, A Regev, AF Schier
Science 360 (6392), eaar3131, 2018
1392018
Magnitude and kinetics of CD8+ T cell activation during hyperacute HIV infection impact viral set point
ZM Ndhlovu, P Kamya, N Mewalal, HN Kløverpris, T Nkosi, K Pretorius, ...
Immunity 43 (3), 591-604, 2015
1052015
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
JR Moffitt, D Bambah-Mukku, SW Eichhorn, E Vaughn, K Shekhar, ...
Science 362 (6416), eaau5324, 2018
652018
Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes
K Shekhar, CF Ruberman, AL Ferguson, JP Barton, M Kardar, ...
Physical review E 88 (6), 062705, 2013
542013
Hydrophobic CDR3 residues promote the development of self-reactive T cells
BD Stadinski, K Shekhar, I Gómez-Touriño, J Jung, K Sasaki, AK Sewell, ...
Nature immunology 17 (8), 946, 2016
452016
Comprehensive identification and spatial mapping of habenular neuronal types using single-cell RNA-seq
S Pandey, K Shekhar, A Regev, AF Schier
Current Biology 28 (7), 1052-1065. e7, 2018
442018
Continuous immunotypes describe human immune variation and predict diverse responses
KJ Kaczorowski, K Shekhar, D Nkulikiyimfura, CL Dekker, H Maecker, ...
Proceedings of the National Academy of Sciences 114 (30), E6097-E6106, 2017
412017
T helper cell cytokines modulate intestinal stem cell renewal and differentiation
M Biton, AL Haber, N Rogel, G Burgin, S Beyaz, A Schnell, O Ashenberg, ...
Cell 175 (5), 1307-1320. e22, 2018
372018
A carbon powder-nanotube composite cathode for non-aqueous lithium-air batteries
P Tan, W Shyy, ZH Wei, L An, TS Zhao
Electrochimica Acta 147, 1-8, 2014
342014
Molecular classification and comparative taxonomics of foveal and peripheral cells in primate retina
YR Peng, K Shekhar, W Yan, D Herrmann, A Sappington, GS Bryman, ...
Cell 176 (5), 1222-1237. e22, 2019
322019
Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design
AA Quadeer, RHY Louie, K Shekhar, AK Chakraborty, IM Hsing, ...
Journal of virology 88 (13), 7628-7644, 2014
27*2014
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