|SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler|
R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ...
GigaScience 1 (1), 18, 2012
|The oyster genome reveals stress adaptation and complexity of shell formation|
G Zhang, X Fang, X Guo, LI Li, R Luo, F Xu, P Yang, L Zhang, X Wang, ...
Nature 490 (7418), 49-54, 2012
|MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph|
D Li, CM Liu, R Luo, K Sadakane, TW Lam
Bioinformatics 31 (10), 1674-1676, 2015
|Sequencing of 50 human exomes reveals adaptation to high altitude|
X Yi, Y Liang, E Huerta-Sanchez, X Jin, ZXP Cuo, JE Pool, X Xu, H Jiang, ...
Science 329 (5987), 75-78, 2010
|Mapping copy number variation by population-scale genome sequencing|
RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ...
Nature 470 (7332), 59-65, 2011
|SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads|
Y Xie, G Wu, J Tang, R Luo, J Patterson, S Liu, W Huang, G He, S Gu, S Li, ...
Bioinformatics 30 (12), 1660-1666, 2014
|Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species|
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
|Assemblathon 1: a competitive assessment of de novo short read assembly methods|
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
|The DNA methylome of human peripheral blood mononuclear cells|
Y Li, J Zhu, G Tian, N Li, Q Li, M Ye, H Zheng, J Yu, H Wu, J Sun, H Zhang, ...
PLoS biol 8 (11), e1000533, 2010
|MEGAHIT v1.0: a fast and scalable metagenome assembler driven by advanced methodologies and community practices|
D Li, R Luo, CM Liu, CM Leung, HF Ting, K Sadakane, H Yamashita, ...
Methods 102, 3-11, 2016
|SOAP3: ultra-fast GPU-based parallel alignment tool for short reads|
CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ...
Bioinformatics 28 (6), 878-879, 2012
|Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression|
X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang, X Zheng, H Zhang, ...
BMC genomics 13 (1), 300, 2012
|Building the sequence map of the human pan-genome|
R Li, Y Li, H Zheng, R Luo, H Zhu, Q Li, W Qian, Y Ren, G Tian, J Li, ...
Nature biotechnology 28 (1), 57-63, 2010
|COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly|
B Liu, J Yuan, SM Yiu, Z Li, Y Xie, Y Chen, Y Shi, H Zhang, Y Li, TW Lam, ...
Bioinformatics 28 (22), 2870-2874, 2012
|Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly|
Y Li, H Zheng, R Luo, H Wu, H Zhu, R Li, H Cao, B Wu, S Huang, H Shao, ...
Nature biotechnology 29 (8), 723-730, 2011
|SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner|
R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ...
PloS one 8 (5), e65632, 2013
|Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber|
Z Zhang, L Mao, H Chen, F Bu, G Li, J Sun, S Li, H Sun, C Jiao, R Blakely, ...
The Plant Cell 27 (6), 1595-1604, 2015
|de novo assembly of a haplotype-resolved human genome|
H Cao, H Wu, R Luo, S Huang, Y Sun, X Tong, Y Xie, B Liu, H Yang, ...
Nature biotechnology 33 (6), 617, 2015
|A multi-task convolutional deep neural network for variant calling in single molecule sequencing|
R Luo, FJ Sedlazeck, TW Lam, MC Schatz
Nature communications 10 (1), 1-11, 2019
|MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)|
R Luo, J Cheung, E Wu, H Wang, SH Chan, WC Law, G He, C Yu, CM Liu, ...
Bmc bioinformatics 16 (S7), S10, 2015