Yan Cui
Yan Cui
Associate Professor of Genetics, Genomics and Informatics, UTHSC
Verified email at uthsc.edu - Homepage
Cited by
Cited by
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways
A Bhattacharya, JD Ziebarth, Y Cui
Nucleic acids research 42 (D1), D86-D91, 2014
nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms
L Bao, M Zhou, Y Cui
Nucleic acids research 33 (suppl 2), W480-W482, 2005
Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information
L Bao, Y Cui
Bioinformatics 21 (10), 2185-2190, 2005
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits
L Bao, M Zhou, L Wu, L Lu, D Goldowitz, RW Williams, Y Cui
Nucleic acids research 35 (suppl 1), D51-D54, 2007
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression
W Deng, X Zhu, G SkogerbÝ, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, ...
Genome research 16 (1), 20-29, 2006
CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization
JD Ziebarth, A Bhattacharya, Y Cui
Nucleic acids research 41 (D1), D188-D194, 2013
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits
JD Ziebarth, A Bhattacharya, A Chen, Y Cui
Nucleic acids research 40 (D1), D216-D221, 2012
CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators
L Bao, M Zhou, Y Cui
Nucleic acids research 36 (suppl 1), D83-D87, 2008
Protein folding simulation with genetic algorithm and supersecondary structure constraints
Y Cui, RS Chen, WH Wong
Proteins Structure Function and Genetics 31 (3), 247-257, 1998
Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes
Y Cui, WH Wong, E Bornberg-Bauer, HS Chan
Proceedings of the National Academy of Sciences 99 (2), 809-814, 2002
Inferring gene transcriptional modulatory relations: a genetical genomics approach
H Li, L Lu, KF Manly, EJ Chesler, L Bao, J Wang, M Zhou, RW Williams, ...
Human molecular genetics 14 (9), 1119-1125, 2005
SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions
A Bhattacharya, Y Cui
Nucleic acids research 44 (D1), D1005-D1010, 2016
SomamiR: a database for somatic mutations impacting microRNA function in cancer
A Bhattacharya, JD Ziebarth, Y Cui
Nucleic acids research 41 (D1), D977-D982, 2013
Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes
JD Ziebarth, A Bhattacharya, Y Cui
PloS one 7 (10), e47137, 2012
Transfer Learning for Molecular Cancer classification using Deep Neural Networks
RK Sevakula, V Singh, NK Verma, C Kumar, Y Cui
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018
Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits
H Li, H Chen, L Bao, KF Manly, EJ Chesler, L Lu, J Wang, M Zhou, ...
Human molecular genetics 15 (3), 481-492, 2006
Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray
H He, L Cai, G SkogerbÝ, W Deng, T Liu, X Zhu, Y Wang, D Jia, Z Zhang, ...
Nucleic acids research 34 (10), 2976-2983, 2006
Pre‐transplant predictors of one yr weight gain after kidney transplantation
AK Cashion, DK Hathaway, A Stanfill, F Thomas, JD Ziebarth, Y Cui, ...
Clinical transplantation 28 (11), 1271-1278, 2014
miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival
P Fan, Z Chen, P Tian, W Liu, Y Jiao, Y Xue, A Bhattacharya, J Wu, M Lu, ...
PloS one 8 (4), e60888, 2013
Host genetics and Chlamydia disease: prediction and validation of disease severity mechanisms
I Miyairi, J Ziebarth, JD Laxton, X Wang, N Van Rooijen, RW Williams, ...
PloS one 7 (3), e33781, 2012
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