Geraldine Van der Auwera
Geraldine Van der Auwera
Data Sciences Platform, Broad Institute
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From FastQ data to high‐confidence variant calls: the genome analysis toolkit best practices pipeline
GA Van der Auwera, MO Carneiro, C Hartl, R Poplin, G Del Angel, ...
Current protocols in bioinformatics 43 (1), 11.10. 1-11.10. 33, 2013
Scaling accurate genetic variant discovery to tens of thousands of samples
R Poplin, V Ruano-Rubio, MA DePristo, TJ Fennell, MO Carneiro, ...
BioRxiv, 201178, 2017
Bacillus taxonomy in the genomic era finds phenotypes to be essential though often misleading
H Maughan, G Van der Auwera
Infection, Genetics and Evolution 11 (5), 789-797, 2011
Conjugative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and of the Bacillus thuringiensis plasmid pBT9727
GA Van der Auwera, L Andrup, J Mahillon
BMC genomics 6 (1), 1-14, 2005
Current protocols in bioinformatics
GA Van der Auwera, MO Carneiro, C Hartl, R Poplin, G Del Angel, ...
Curr. Protoc. Bioinforma 11 (11.10), 1-11.10, 2002
Plasmid exchanges among members of the Bacillus cereus group in foodstuffs
GA Van der Auwera, S Timmery, F Hoton, J Mahillon
International journal of food microbiology 113 (2), 164-172, 2007
Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes
D Sen, GA Van der Auwera, LM Rogers, CM Thomas, CJ Brown, EM Top
Applied and environmental microbiology 77 (22), 7975-7983, 2011
Distribution, diversity, and potential mobility of extrachromosomal elements related to the Bacillus anthracis pXO1 and pXO2 virulence plasmids
X Hu, G Van der Auwera, S Timmery, L Zhu, J Mahillon
Applied and environmental microbiology 75 (10), 3016-3028, 2009
Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids
GA Van der Auwera, JE Król, H Suzuki, B Foster, R Van Houdt, CJ Brown, ...
Antonie Van Leeuwenhoek 96 (2), 193-204, 2009
Hemolytic and nonhemolytic enterotoxin genes are broadly distributed among Bacillus thuringiensis isolated from wild mammals
I Swiecicka, GA Van der Auwera, J Mahillon
Microbial ecology 52 (3), 544-551, 2006
Diverse broad-host-range plasmids from freshwater carry few accessory genes
CJ Brown, D Sen, H Yano, ML Bauer, LM Rogers, GA Van der Auwera, ...
Applied and environmental microbiology 79 (24), 7684-7695, 2013
Whole-genome sequences of 94 environmental isolates of Bacillus cereus sensu lato
GA Van der Auwera, M Feldgarden, R Kolter, J Mahillon
Genome announcements 1 (5), 2013
Full-stack genomics pipelining with GATK4+ WDL+ Cromwell
K Voss, G Van der Auwera, J Gentry
F1000Research 6, 2017
Conjugation-mediated plasmid exchange between bacteria grown under space flight conditions
P De Boever, M Mergeay, V Ilyin, D Forget-Hanus, G Van der Auwera, ...
Microgravity Science and Technology 19 (5), 138-144, 2007
Self-transfer and mobilisation capabilities of the pXO2-like plasmid pBT9727 from Bacillus thuringiensis subsp. konkukian 97-27
GA Van der Auwera, S Timmery, J Mahillon
Plasmid 59 (2), 134-138, 2008
TnXO1, a germination-associated class II transposon from Bacillus anthracis
G Van der Auwera, J Mahillon
Plasmid 53 (3), 251-257, 2005
Transcriptional analysis of the conjugative plasmid pAW63 from Bacillus thuringiensis
G Van der Auwera, J Mahillon
Plasmid 60 (3), 190-199, 2008
Molecular characterization of a DNA fragment harboring the replicon of pBMB165 from Bacillus thuringiensis subsp. tenebrionis
J Huang, S Guo, J Mahillon, GA Van der Auwera, L Wang, D Han, Z Yu, ...
BMC genomics 7 (1), 1-11, 2006
Genome sequence of Serratia plymuthica V4
S Cleto, G Van der Auwera, C Almeida, MJ Vieira, H Vlamakis, R Kolter
Genome announcements 2 (3), 2014
Somatic variation discovery with GATK4
GA Van der Auwera
Cancer Research 77 (13 Supplement), 3590-3590, 2017
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