Segment anything model (sam) for digital pathology: Assess zero-shot segmentation on whole slide imaging R Deng, C Cui, Q Liu, T Yao, LW Remedios, S Bao, BA Landman, ... arXiv preprint arXiv:2304.04155, 2023 | 115 | 2023 |
VoxelEmbed: 3D instance segmentation and tracking with voxel embedding based deep learning M Zhao, Q Liu, A Jha, R Deng, T Yao, A Mahadevan-Jansen, MJ Tyska, ... Machine Learning in Medical Imaging: 12th International Workshop, MLMI 2021 …, 2021 | 104 | 2021 |
Compound figure separation of biomedical images with side loss T Yao, C Qu, Q Liu, R Deng, Y Tian, J Xu, A Jha, S Bao, M Zhao, AB Fogo, ... Deep Generative Models, and Data Augmentation, Labelling, and Imperfections …, 2021 | 37 | 2021 |
Simtriplet: Simple triplet representation learning with a single gpu Q Liu, PC Louis, Y Lu, A Jha, M Zhao, R Deng, T Yao, JT Roland, H Yang, ... Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th …, 2021 | 36 | 2021 |
Deep generative models, and data augmentation, labelling, and imperfections T Yao, C Qu, Q Liu, R Deng, Y Tian, J Xu, A Jha, S Bao, M Zhao, A Fogo Deep Generative Models, and Data Augmentation, Labelling, and Imperfections …, 2021 | 21 | 2021 |
All-in-sam: from weak annotation to pixel-wise nuclei segmentation with prompt-based finetuning C Cui, R Deng, Q Liu, T Yao, S Bao, LW Remedios, BA Landman, Y Tang, ... Journal of Physics: Conference Series 2722 (1), 012012, 2024 | 16 | 2024 |
Glo-In-One: holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining T Yao, Y Lu, J Long, A Jha, Z Zhu, Z Asad, H Yang, AB Fogo, Y Huo Journal of Medical Imaging 9 (5), 052408-052408, 2022 | 6 | 2022 |
A unified single-stage learning model for estimating fiber orientation distribution functions on heterogeneous multi-shell diffusion-weighted mri T Yao, N Newlin, P Kanakaraj, LY Cai, K Ramadass, K Schilling, ... arXiv preprint arXiv:2303.16376, 2023 | 5 | 2023 |
Omni-seg: A scale-aware dynamic network for renal pathological image segmentation R Deng, Q Liu, C Cui, T Yao, J Long, Z Asad, RM Womick, Z Zhu, AB Fogo, ... IEEE Transactions on Biomedical Engineering, 2023 | 5 | 2023 |
Comparing voxel-and feature-wise harmonization of complex graph measures from multiple sites for structural brain network investigation of aging NR Newlin, LY Cai, T Yao, D Archer, KG Schilling, TJ Hohman, ... Medical Imaging 2023: Image Processing 12464, 524-530, 2023 | 4 | 2023 |
Deep constrained spherical deconvolution for robust harmonization T Yao, F Rheault, LY Cai, V Nath, Z Asad, N Newlin, C Cui, R Deng, ... Medical Imaging 2023: Image Processing 12464, 169-176, 2023 | 3 | 2023 |
Robust fiber odf estimation using deep constrained spherical deconvolution for diffusion mri T Yao, F Rheault, LY Cai, Z Asad, N Newlin, C Cui, R Deng, K Ramadass, ... arXiv preprint arXiv:2306.02900, 2023 | 2 | 2023 |
Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access M Lin, B Hou, S Mishra, T Yao, Y Huo, Q Yang, F Wang, G Shih, Y Peng Computers in Biology and Medicine 159, 106962, 2023 | 2 | 2023 |
Holistic fine-grained global glomerulosclerosis characterization: from detection to unbalanced classification Y Lu, H Yang, Z Asad, Z Zhu, T Yao, J Xu, AB Fogo, Y Huo Journal of Medical Imaging 9 (1), 014005-014005, 2022 | 2 | 2022 |
Omni-Seg+: A Scale-aware Dynamic Network for Pathological Image Segmentation. arXiv 2022 R Deng, Q Liu, C Cui, T Yao, J Long, Z Asad, RM Womick, Z Zhu, AB Fogo, ... arXiv preprint arXiv:2206.13632, 0 | 2 | |
Spatial pathomics toolkit for quantitative analysis of podocyte nuclei with histology and spatial transcriptomics data in renal pathology J Chen, Y Wang, R Deng, Q Liu, C Cui, T Yao, Y Liu, J Zhong, AB Fogo, ... Medical Imaging 2024: Digital and Computational Pathology 12933, 252-260, 2024 | 1 | 2024 |
MidRISH: Unbiased harmonization of rotationally invariant harmonics of the diffusion signal NR Newlin, ME Kim, P Kanakaraj, T Yao, T Hohman, KR Pechman, ... Magnetic Resonance Imaging, 2024 | 1 | 2024 |
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning Q Liu, C Cui, R Deng, Z Asad, T Yao, Z Zhu, Y Huo MICCAI Workshop on Resource-Efficient Medical Image Analysis, 75-84, 2022 | 1 | 2022 |
Field-of-View Extension for Diffusion MRI via Deep Generative Models C Gao, S Bao, M Kim, N Newlin, P Kanakaraj, T Yao, G Rudravaram, ... arXiv preprint arXiv:2405.03652, 2024 | | 2024 |
Learning-based free-water correction using single-shell diffusion MRI T Yao, DB Archer, P Kanakaraj, N Newlin, S Bao, D Moyer, K Schilling, ... Medical Imaging 2024: Image Processing 12926, 36-42, 2024 | | 2024 |