Casey S. Greene
Casey S. Greene
Biochemistry & Molecular Genetics; Center for Health AI; University of Colorado Anschutz Medical
Verified email at cuanschutz.edu - Homepage
Title
Cited by
Cited by
Year
Oncogenic signaling pathways in the cancer genome atlas
F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ...
Cell 173 (2), 321-337. e10, 2018
8982018
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
8552018
Understanding multicellular function and disease with human tissue-specific networks
CS Greene, A Krishnan, AK Wong, E Ricciotti, RA Zelaya, ...
Nature Genetics, 2015
5342015
Genomic and molecular landscape of DNA damage repair deficiency across The Cancer Genome Atlas
TA Knijnenburg, L Wang, MT Zimmermann, N Chambwe, GF Gao, ...
Cell reports 23 (1), 239-254. e6, 2018
3072018
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, T Ronnen Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
2782016
Failure to replicate a genetic association may provide important clues about genetic architecture
CS Greene, NM Penrod, SM Williams, JH Moore
PloS one 4 (6), e5639, 2009
2602009
International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways
HJ Cordell, Y Han, GF Mells, Y Li, GM Hirschfield, CS Greene, G Xie, ...
Nature communications 6 (1), 1-11, 2015
2042015
Big Data Bioinformatics
CS Greene, J Tan, M Ung, JH Moore, C Cheng
Journal of Cellular Physiology, 2014
1692014
Sci-Hub provides access to nearly all scholarly literature
DS Himmelstein, AR Romero, JG Levernier, TA Munro, SR McLaughlin, ...
ELife 7, e32822, 2018
1512018
Privacy-preserving generative deep neural networks support clinical data sharing
BK Beaulieu-Jones, ZS Wu, C Williams, R Lee, SP Bhavnani, JB Byrd, ...
Circulation: Cardiovascular Quality and Outcomes 12 (7), e005122, 2019
1492019
Defining cell-type specificity at the transcriptional level in human disease
W Ju, CS Greene, F Eichinger, V Nair, JB Hodgin, M Bitzer, Y Lee, Q Zhu, ...
Genome research 23 (11), 1862-1873, 2013
1402013
Recent advances and emerging applications in text and data mining for biomedical discovery
GH Gonzalez, T Tahsin, BC Goodale, AC Greene, CS Greene
Briefings in bioinformatics 17 (1), 33-42, 2016
1392016
Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions
CS Greene, NM Penrod, J Kiralis, JH Moore
BioData mining 2 (1), 1-9, 2009
1362009
Semi-supervised learning of the electronic health record for phenotype stratification
BK Beaulieu-Jones, CS Greene
Journal of biomedical informatics 64, 168-178, 2016
1262016
UNSUPERVISED FEATURE CONSTRUCTION AND KNOWLEDGE EXTRACTION FROM GENOME-WIDE ASSAYS OF BREAST CANCER WITH DENOISING AUTOENCODERS
JIE TAN, M UNG, C CHENG, CS GREENE
Pacific Symposium on Biocomputing, 2015
1172015
Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders
GP Way, CS Greene
Pacific Symposium on Biocomputing, 174474, 2017
1152017
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks
AK Wong, CY Park, CS Greene, LA Bongo, Y Guan, OG Troyanskaya
Nucleic acids research 40 (W1), W484-W490, 2012
1082012
Reproducibility of computational workflows is automated using continuous analysis
BK Beaulieu-Jones, CS Greene
Nature biotechnology 35 (4), 342-346, 2017
1022017
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ...
Nature Methods, 2015
942015
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
932019
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Articles 1–20