| Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli M Kim, N Rai, V Zorraquino, I Tagkopoulos Nature communications 7 (1), 13090, 2016 | 163 | 2016 |
| An integrative, multi‐scale, genome‐wide model reveals the phenotypic landscape of Escherichia coli J Carrera, R Estrela, J Luo, N Rai, A Tsoukalas, I Tagkopoulos Molecular systems biology 10 (7), 735, 2014 | 102 | 2014 |
| The Genetic and Transcriptional Basis of Short and Long Term Adaptation across Multiple Stresses in Escherichia coli V Zorraquino, M Kim, N Rai, I Tagkopoulos Molecular Biology and Evolution 34 (3), 707-717, 2017 | 53 | 2017 |
| The computational diet: a review of computational methods across diet, microbiome, and health A Eetemadi, N Rai, BMP Pereira, M Kim, H Schmitz, I Tagkopoulos Frontiers in microbiology 11, 393, 2020 | 41 | 2020 |
| Interactions among quorum sensing inhibitors R Anand, N Rai, M Thattai PloS one 8 (4), e62254, 2013 | 35 | 2013 |
| Prediction by promoter logic in bacterial quorum sensing N Rai, R Anand, K Ramkumar, V Sreenivasan, S Dabholkar, ... PLoS computational biology 8 (1), e1002361, 2012 | 27 | 2012 |
| Quorum sensing biosensors N Rai, R Rai, KV Venkatesh Quorum sensing vs quorum quenching: a battle with no end in sight, 173-183, 2015 | 26 | 2015 |
| Accelerated knowledge discovery from omics data by optimal experimental design X Wang, N Rai, B Merchel Piovesan Pereira, A Eetemadi, I Tagkopoulos Nature communications 11 (1), 5026, 2020 | 23 | 2020 |
| 4-Hydroxy-trans-2-nonenal (4-HNE) induces neuronal SH-SY5Y cell death via hampering ATP binding at kinase domain of Akt1 MP Kashyap, AK Singh, DK Yadav, MA Siddiqui, RK Srivastava, ... Archives of Toxicology 89, 243-258, 2015 | 21 | 2015 |
| Knowledge integration and decision support for accelerated discovery of antibiotic resistance genes J Youn, N Rai, I Tagkopoulos Nature communications 13 (1), 2360, 2022 | 17 | 2022 |
| Quorum sensing in competence and sporulation N Rai, R Rai, KV Venkatesh Quorum sensing vs quorum quenching: a battle with no end in sight, 61-64, 2014 | 13 | 2014 |
| Tolerance to Glutaraldehyde in Escherichia coli Mediated by Overexpression of the Aldehyde Reductase YqhD by YqhC B Merchel Piovesan Pereira, M Adil Salim, N Rai, I Tagkopoulos Frontiers in Microbiology 12, 680553, 2021 | 12 | 2021 |
| RiboTALE: A modular, inducible system for accurate gene expression control N Rai, A Ferreiro, A Neckelmann, A Soon, A Yao, J Siegel, MT Facciotti, ... Scientific reports 5 (1), 10658, 2015 | 10 | 2015 |
| Population collapse and adaptive rescue during long‐term chemostat fermentation N Rai, L Huynh, M Kim, I Tagkopoulos Biotechnology and Bioengineering 116 (3), 693-703, 2019 | 9 | 2019 |
| Promoter reliability in modular transcriptional networks R Anand, N Rai, M Thattai Methods in Enzymology 497, 31-49, 2011 | 7 | 2011 |
| Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli. Nat. Commun. 7, 13090 M Kim, N Rai, V Zorraquino, I Tagkopoulos | 5 | 2016 |
| Anti-diabetic effect of T. cordifolia. Part I: Effect on fasting blood level, glucose tolerance and adrenaline induced hyperglycaemia SS Gupta, SLL Verma, VP Garg, N Rai Indian J. Med. Res 55, 733-745, 1967 | 5 | 1967 |
| Deciphering the genetic and transcriptional basis of cross-stress responses in Escherichia coli under complex evolutionary scenarios V Zorraquino-Salvo, S Quinones-Soto, M Kim, N Rai, I Tagkopoulos bioRxiv, 010595, 2014 | 3 | 2014 |
| Understanding the Formation and Mechanism of Anticipatory Responses in Escherichia coli N Rai, M Kim, I Tagkopoulos International journal of molecular sciences 23 (11), 5985, 2022 | 1 | 2022 |
| A network-based model for drug repurposing in Rheumatoid Arthritis IT Ki-Jo Kim, Navneet Rai, Minseung Kim BioRxiv, 2018 | 1 | 2018 |
Ilias TagkopoulosProfessor, Computer Science and Genome Center, University of California, DavisVerified email at ucdavis.edu
