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Shantao Li
Shantao Li
Postdoctoral Research Fellow
Verified email at stanford.edu
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
14992020
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7502019
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
4992020
The real cost of sequencing: scaling computation to keep pace with data generation
P Muir, S Li, S Lou, D Wang, DJ Spakowicz, L Salichos, J Zhang, ...
Genome biology 17, 1-9, 2016
4832016
Next-generation sequencing to diagnose suspected genetic disorders
DR Adams, CM Eng
New England Journal of Medicine 379 (14), 1353-1362, 2018
2742018
Genomic basis for RNA alterations in cancer
PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ...
Nature 578 (7793), 129-136, 2020
2732020
Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell 180 (5), 915-927. e16, 2020
1142020
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 3696, 2020
1052020
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
932019
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms
A Abyzov, S Li, DR Kim, M Mohiyuddin, AM Stütz, NF Parrish, XJ Mu, ...
Nature communications 6 (1), 7256, 2015
922015
Predicting the frequencies of drug side effects
D Galeano, S Li, M Gerstein, A Paccanaro
Nature communications 11 (1), 4575, 2020
752020
Genomics and data science: an application within an umbrella
FCP Navarro, H Mohsen, C Yan, S Li, M Gu, W Meyerson, M Gerstein
Genome biology 20, 1-11, 2019
732019
Identifying allosteric hotspots with dynamics: application to inter-and intra-species conservation
D Clarke, A Sethi, S Li, S Kumar, RWF Chang, J Chen, M Gerstein
Structure 24 (5), 826-837, 2016
562016
Whole-genome analysis of papillary kidney cancer finds significant noncoding alterations
S Li, BM Shuch, MB Gerstein
PLoS genetics 13 (3), e1006685, 2017
462017
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ...
Nature communications 11 (1), 4748, 2020
382020
Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries
J Zhou, S Li, KK Leung, B O’Donovan, JY Zou, JL DeRisi, JA Wells
Proceedings of the National Academy of Sciences 117 (41), 25464-25475, 2020
342020
Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood
S Li, FW Crawford, MB Gerstein
Nature communications 11 (1), 3575, 2020
312020
Landscape and variation of novel retroduplications in 26 human populations
Y Zhang, S Li, A Abyzov, MB Gerstein
PLoS computational biology 13 (6), e1005567, 2017
302017
Estimation of the carrier frequency of fumarate hydratase alterations and implications for kidney cancer risk in hereditary leiomyomatosis and renal cancer
B Shuch, S Li, H Risch, RS Bindra, PD McGillivray, M Gerstein
Cancer 126 (16), 3657-3666, 2020
262020
Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat Commun. 2019; 10 (1): 1784
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Epub 2019/04/18. https://doi. org/10.1038/s41467-018-08148-z PMID: 30992455, 0
19
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Articles 1–20