Soundhararajan Gopi
Soundhararajan Gopi
Post-doctoral Researcher, University of Zürich
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A general mechanism for the propagation of mutational effects in proteins
N Rajasekaran, S Suresh, S Gopi, K Raman, AN Naganathan
Biochemistry 56 (1), 294-305, 2017
Genome-wide identification and functional annotation of miRNAs in anti-inflammatory plant and their cross-kingdom regulation in Homo sapiens
A Sharma, S Sahu, P Kumari, SR Gopi, R Malhotra, S Biswas
Journal of Biomolecular Structure and Dynamics 35 (7), 1389-1400, 2017
Quantifying protein disorder through measures of excess conformational entropy
N Rajasekaran, S Gopi, A Narayan, AN Naganathan
The Journal of Physical Chemistry B 120 (19), 4341-4350, 2016
Tunable order–disorder continuum in protein–DNA interactions
S Munshi, S Gopi, G Asampille, S Subramanian, LA Campos, HS Atreya, ...
Nucleic Acids Research 46 (17), 8700-8709, 2018
Thermodynamics and folding landscapes of large proteins from a statistical mechanical model
S Gopi, A Aranganathan, AN Naganathan
Current Research in Structural Biology 1, 6-12, 2019
Toward a quantitative description of microscopic pathway heterogeneity in protein folding
S Gopi, A Singh, S Suresh, S Paul, S Ranu, AN Naganathan
Physical Chemistry Chemical Physics 19 (31), 20891-20903, 2017
Protein plasticity driven by disorder and collapse governs the heterogeneous binding of CytR to DNA
S Munshi, S Gopi, S Subramanian, LA Campos, AN Naganathan
Nucleic Acids Research 46 (8), 4044-4053, 2018
pStab: prediction of stable mutants, unfolding curves, stability maps and protein electrostatic frustration
S Gopi, D Devanshu, P Krishna, AN Naganathan
Bioinformatics 34 (5), 875-877, 2018
Energetic and topological determinants of a phosphorylation-induced disorder-to-order protein conformational switch
S Gopi, N Rajasekaran, A Singh, S Ranu, AN Naganathan
Physical Chemistry Chemical Physics 17 (41), 27264-27269, 2015
A binding cooperativity switch driven by synergistic structural swelling of an osmo-regulatory protein pair
A Narayan, S Gopi, D Fushman, AN Naganathan
Nature communications 10 (1), 1995, 2019
pPerturb: A server for predicting long-distance energetic couplings and mutation-induced stability changes in proteins via perturbations
S Gopi, D Devanshu, N Rajasekaran, S Anantakrishnan, AN Naganathan
ACS omega 5 (2), 1142-1146, 2020
Electrostatic frustration shapes folding mechanistic differences in paralogous bacterial stress response proteins
A Narayan, S Gopi, B Lukose, AN Naganathan
Journal of molecular biology 432 (17), 4830-4839, 2020
Folding intermediates, heterogeneous native ensembles and protein function
AN Naganathan, R Dani, S Gopi, A Aranganathan, A Narayan
Journal of Molecular Biology 433 (24), 167325, 2021
Extracting the hidden distributions underlying the mean transition state structures in protein folding
S Gopi, S Paul, S Ranu, AN Naganathan
The journal of physical chemistry letters 9 (7), 1771-1777, 2018
Diverse native ensembles dictate the differential functional responses of nuclear receptor ligand-binding domains
S Gopi, B Lukose, AN Naganathan
The Journal of Physical Chemistry B 125 (14), 3546-3555, 2021
Non-specific DNA-driven quinary interactions promote structural transitions in proteins
S Gopi, AN Naganathan
Physical Chemistry Chemical Physics 22 (22), 12671-12677, 2020
Dynamic association of the H3K64 trimethylation mark with genes encoding exported proteins in Plasmodium falciparum
CA Jabeena, G Govindaraju, M Rawat, S Gopi, DV Sethumadhavan, ...
Journal of Biological Chemistry 296, 2021
Molecular dynamics simulations for the study of chromatin biology
GB Brandani, S Gopi, M Yamauchi, S Takada
Current Opinion in Structural Biology 77, 102485, 2022
Structural–energetic basis for coupling between equilibrium fluctuations and phosphorylation in a protein native ensemble
H Golla, A Kannan, S Gopi, S Murugan, LR Perumalsamy, ...
ACS Central Science 8 (2), 282-293, 2022
Genome wide analysis of Chlamydia pneumoniae for candidate vaccine development
A Sharma, S Rajan G, R Kharb, S Biswas
Current Computer-Aided Drug Design 12 (3), 206-215, 2016
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