Matteo Comin
Title
Cited by
Cited by
Year
Benchmarking of alignment-free sequence comparison methods
A Zielezinski, HZ Girgis, G Bernard, CA Leimeister, K Tang, T Dencker, ...
Genome biology 20 (1), 1-18, 2019
862019
Alignment-free phylogeny of whole genomes using underlying subwords
M Comin, D Verzotto
Algorithms for Molecular Biology 7 (1), 1-12, 2012
652012
MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures
S Girotto, C Pizzi, M Comin
Bioinformatics 32 (17), i567-i575, 2016
422016
VARUN: discovering extensible motifs under saturation constraints
A Apostolico, M Comin, L Parida
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (4), 752-762, 2008
352008
PROuST: a comparison method of three-dimensional structures of proteins using indexing techniques
M Comin, C Guerra, G Zanotti
Journal of Computational Biology 11 (6), 1061-1072, 2004
342004
Conservative extraction of over-represented extensible motifs
A Apostolico, M Comin, L Parida
Bioinformatics 21 (suppl_1), i9-i18, 2005
322005
Clustering of reads with alignment-free measures and quality values
M Comin, A Leoni, M Schimd
Algorithms for Molecular Biology 10 (1), 1-10, 2015
272015
The irredundant class method for remote homology detection of protein sequences
M Comin, D Verzotto
Journal of Computational Biology 18 (12), 1819-1829, 2011
272011
Mining, compressing and classifying with extensible motifs
A Apostolico, M Comin, L Parida
Algorithms for Molecular Biology 1 (1), 1-7, 2006
252006
Classification of protein sequences by means of irredundant patterns
M Comin, D Verzotto
BMC bioinformatics 11 (1), 1-11, 2010
212010
Beyond fixed-resolution alignment-free measures for mammalian enhancers sequence comparison
M Comin, D Verzotto
IEEE/ACM Transactions on Computational Biology and Bioinformatics 11 (4 …, 2014
202014
Fast entropic profiler: An information theoretic approach for the discovery of patterns in genomes
M Comin, M Antonello
IEEE/ACM Transactions on Computational Biology and Bioinformatics 11 (3 …, 2014
202014
Whole-genome phylogeny by virtue of unic subwords
M Comin, D Verzotto
2012 23rd International Workshop on Database and Expert Systems Applications …, 2012
202012
Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns
M Comin, M Schimd
BMC bioinformatics 15 (9), 1-10, 2014
182014
Fast computation of entropic profiles for the detection of conservation in genomes
M Comin, M Antonello
IAPR International Conference on Pattern Recognition in Bioinformatics, 277-288, 2013
182013
Motifs in ziv-lempel-welch clef
A Apostolico, M Comin, L Parida
Data Compression Conference, 2004. Proceedings. DCC 2004, 72-81, 2004
182004
Bridging lossy and lossless compression by motif pattern discovery
A Apostolico, M Comin, L Parida
General theory of information transfer and combinatorics, 793-813, 2006
172006
Detection of subtle variations as consensus motifs
M Comin, L Parida
Theoretical Computer Science 395 (2-3), 158-170, 2008
132008
Metagenomic reads binning with spaced seeds
S Girotto, M Comin, C Pizzi
Theoretical Computer Science 698, 88-99, 2017
122017
Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values
M Comin, M Schimd
BMC medical genomics 9 (1), 41-50, 2016
122016
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Articles 1–20