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| CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize JI Gent, NA Ellis, L Guo, AE Harkess, Y Yao, X Zhang, RK Dawe Genome research 23 (4), 628-637, 2013 | 319 | 2013 |
| De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ... Science 373 (6555), 655-662, 2021 | 309 | 2021 |
| RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ... Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015 | 210 | 2015 |
| Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma JI Gent, AT Lamm, DM Pavelec, JM Maniar, P Parameswaran, L Tao, ... Molecular cell 37 (5), 679-689, 2010 | 210 | 2010 |
| Spreading of heterochromatin is limited to specific families of maize retrotransposons SR Eichten, NA Ellis, I Makarevitch, CT Yeh, JI Gent, L Guo, KM McGinnis, ... PLoS genetics 8 (12), e1003127, 2012 | 167 | 2012 |
| Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize R Oka, J Zicola, B Weber, SN Anderson, C Hodgman, JI Gent, ... Genome biology 18, 1-24, 2017 | 149 | 2017 |
| A kinesin-14 motor activates neocentromeres to promote meiotic drive in maize RK Dawe, EG Lowry, JI Gent, MC Stitzer, KW Swentowsky, DM Higgins, ... Cell 173 (4), 839-850. e18, 2018 | 112 | 2018 |
| A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference JI Gent, M Schvarzstein, AM Villeneuve, SG Gu, V Jantsch, AZ Fire, ... Genetics 183 (4), 1297-1314, 2009 | 111 | 2009 |
| Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation JI Gent, TF Madzima, R Bader, MR Kent, X Zhang, M Stam, KM McGinnis, ... The Plant Cell 26 (12), 4903-4917, 2014 | 110 | 2014 |
| Gapless assembly of maize chromosomes using long-read technologies J Liu, AS Seetharam, K Chougule, S Ou, KW Swentowsky, JI Gent, ... Genome Biology 21, 1-17, 2020 | 100 | 2020 |
| Haploid induction by a maize cenh3 null mutant N Wang, JI Gent, RK Dawe Science Advances 7 (4), eabe2299, 2021 | 82 | 2021 |
| RNA as a structural and regulatory component of the centromere JI Gent, RK Dawe Annual review of genetics 46, 443-453, 2012 | 67 | 2012 |
| Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications JI Gent, Y Dong, J Jiang, RK Dawe Nucleic acids research 40 (4), 1550-1560, 2012 | 57 | 2012 |
| Loss of RNA-directed DNA methylation in maize chromomethylase and DDM1-type nucleosome remodeler mutants FF Fu, RK Dawe, JI Gent The Plant Cell 30 (7), 1617-1627, 2018 | 48 | 2018 |
| Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome AT Lamm, MR Stadler, H Zhang, JI Gent, AZ Fire Genome research 21 (2), 265-275, 2011 | 48 | 2011 |
| Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives JI Gent, N Wang, RK Dawe Genome Biology 18, 1-11, 2017 | 39 | 2017 |
| Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning JI Gent, KL Schneider, CN Topp, C Rodriguez, GG Presting, RK Dawe Epigenetics & chromatin 4, 1-12, 2011 | 32 | 2011 |
| Genome-wide redistribution of 24-nt siRNAs in rice gametes C Li, H Xu, FF Fu, SD Russell, V Sundaresan, JI Gent Genome Research 30 (2), 173-184, 2020 | 29 | 2020 |
| Gene expression and chromatin modifications associated with maize centromeres H Zhao, X Zhu, K Wang, JI Gent, W Zhang, RK Dawe, J Jiang G3: Genes, Genomes, Genetics 6 (1), 183-192, 2016 | 29 | 2016 |
