Prodconn-protein design using a convolutional neural network Y Zhang, Y Chen, C Wang, CC Lo, X Liu, W Wei, J Zhang Biophysical Journal 118 (3), 43a-44a, 2020 | 67 | 2020 |
Secondary structure assignment for conformationally irregular peptides: Comparison between DSSP, STRIDE and KAKSI Y Zhang, C Sagui Journal of Molecular Graphics and Modelling 55, 72-84, 2015 | 57 | 2015 |
Structure and dynamics of DNA and RNA double helices obtained from the GGGGCC and CCCCGG hexanucleotide repeats that are the hallmark of C9FTD/ALS diseases Y Zhang, C Roland, C Sagui ACS chemical neuroscience 8 (3), 578-591, 2017 | 38 | 2017 |
Structural and dynamical characterization of DNA and RNA quadruplexes obtained from the GGGGCC and GGGCCT hexanucleotide repeats associated with C9FTD/ALS and SCA36 diseases Y Zhang, C Roland, C Sagui ACS chemical neuroscience 9 (5), 1104-1117, 2017 | 29 | 2017 |
Amyloid properties of asparagine and glutamine in prion-like proteins Y Zhang, VH Man, C Roland, C Sagui ACS chemical neuroscience 7 (5), 576-587, 2016 | 29 | 2016 |
Tuning electronic structure of graphene via tailoring structure: theoretical study HY He, Y Zhang, BC Pan Journal of Applied Physics 107 (11), 2010 | 24 | 2010 |
E-motif formed by extrahelical cytosine bases in DNA homoduplexes of trinucleotide and hexanucleotide repeats F Pan, Y Zhang, VH Man, C Roland, C Sagui Nucleic Acids Research 46 (2), 942-955, 2018 | 20 | 2018 |
Applications of AlphaFold beyond protein structure prediction Y Zhang, P Li, F Pan, H Liu, P Hong, X Liu, J Zhang bioRxiv, 2021.11. 03.467194, 2021 | 16 | 2021 |
Molecular conformations and dynamics of nucleotide repeats associated with neurodegenerative diseases: double helices and CAG hairpin loops F Pan, Y Zhang, P Xu, VH Man, C Roland, K Weninger, C Sagui Computational and Structural Biotechnology Journal 19, 2819-2832, 2021 | 13 | 2021 |
The gp41659–671 HIV-1 Antibody Epitope: A Structurally Challenging Small Peptide Y Zhang, C Sagui The Journal of Physical Chemistry B 118 (1), 69-80, 2014 | 11 | 2014 |
A reinforcement learning approach for protein–ligand binding pose prediction C Wang, Y Chen, Y Zhang, K Li, M Lin, F Pan, W Wu, J Zhang BMC bioinformatics 23 (1), 368, 2022 | 10 | 2022 |
Pre-trained models, data augmentation, and ensemble learning for biomedical information extraction and document classification A Erdengasileng, Q Han, T Zhao, S Tian, X Sui, K Li, W Wang, J Wang, ... Database 2022, baac066, 2022 | 7 | 2022 |
Estimating the designability of protein structures F Pan, Y Zhang, X Liu, J Zhang bioRxiv, 2021.11. 03.467111, 2021 | 4 | 2021 |
FTIP-An Accurate and Efficient Method for Global Protein Surface Comparison Y Zhang, X Sui, SM Stagg, J Zhang Biophysical Journal 118 (3), 501a, 2020 | 3 | 2020 |
Protein loop modeling and refinement using deep learning models F Pan, Y Zhang, CC Lo, A Mandal, X Liu, J Zhang bioRxiv, 2021.11. 03.467148, 2021 | 2 | 2021 |
Structure and stability of amyloid protofibrils of polyglutamine and polyasparagine from molecular dynamics simulations VH Man, Y Zhang, C Roland, C Sagui Biomolecular Simulations in Structure-Based Drug Discovery, 2018 | 1 | 2018 |
BioKG: a comprehensive, high-quality biomedical knowledge graph for AI-powered, data-driven biomedical research Y Zhang, F Pan, X Sui, K Yu, K Li, S Tian, A Erdengasileng, Q Han, ... | | 2023 |
ProDCoNN-server: a web server for protein sequence prediction and design from a three-dimensional structure Y Zhang, A Mandal, K Cui, X Liu, J Zhang bioRxiv, 2021.11. 04.467289, 2021 | | 2021 |
Structural Characterization of Various Peptides and Nucleotides Associated with Neurodegenerative Diseases. Y Zhang | | 2016 |
Contrasting Roles of Asparagine and Glutamine in the Aggregation of Prion-Like Proteins Y Zhang, VH Man, C Roland, C Sagui Biophysical Journal 110 (3), 214a-215a, 2016 | | 2016 |