|Efficient endoderm induction from human pluripotent stem cells by logically directing signals controlling lineage bifurcations|
KM Loh, LT Ang, J Zhang, V Kumar, J Ang, JQ Auyeong, KL Lee, ...
Cell stem cell 14 (2), 237-252, 2014
|Histone Acetylome-wide Association Study of Autism Spectrum Disorder|
W Sun, J Poschmann, RCH del Rosario, NN Parikshak, HS Hajan, ...
Cell 167 (5), 1385-1397. e11, 2016
|Uniform, optimal signal processing of mapped deep-sequencing data|
V Kumar, M Muratani, NA Rayan, P Kraus, T Lufkin, HH Ng, S Prabhakar
Nature biotechnology 31 (7), 615-622, 2013
|In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures|
JH Ng, V Kumar, M Muratani, P Kraus, JC Yeo, LP Yaw, K Xue, T Lufkin, ...
Developmental cell 24 (3), 324-333, 2013
|Ncoa3 functions as an essential Esrrb coactivator to sustain embryonic stem cell self-renewal and reprogramming|
M Percharde, F Lavial, JH Ng, V Kumar, RA Tomaz, N Martin, JC Yeo, ...
Genes & development 26 (20), 2286-2298, 2012
|Three-dimensional cryoEM reconstruction of native LDL particles to 16Å resolution at physiological body temperature|
V Kumar, SJ Butcher, K Öörni, P Engelhardt, J Heikkonen, K Kaski, ...
PloS one 6 (5), e18841, 2011
|Oligomerization of hantavirus N protein: C-terminal α-helices interact to form a shared hydrophobic space|
P Kaukinen, V Kumar, K Tulimäki, P Engelhardt, A Vaheri, A Plyusnin
Journal of virology 78 (24), 13669-13677, 2004
|Oligomerization of hantavirus nucleocapsid protein: analysis of the N-terminal coiled-coil domain|
A Alminaite, V Halttunen, V Kumar, A Vaheri, L Holm, A Plyusnin
Journal of virology 80 (18), 9073-9081, 2006
|Genome wide analysis reveals Zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish|
CL Winata, I Kondrychyn, V Kumar, KG Srinivasan, Y Orlov, ...
PLoS genetics 9 (10), e1003852, 2013
|Robust filtering and particle picking in micrograph images towards 3D reconstruction of purified proteins with cryo-electron microscopy|
V Kumar, J Heikkonen, P Engelhardt, K Kaski
Journal of structural biology 145 (1-2), 41-51, 2004
|Longitudinal single-cell RNA sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy|
Nature communications 9, 2018
|Minimum description length denoising with histogram models|
V Kumar, J Heikkonen, J Rissanen, K Kaski
IEEE transactions on signal processing 54 (8), 2922-2928, 2006
|Comprehensive benchmarking reveals H2BK20 acetylation as a distinctive signature of cell-state-specific enhancers and promoters|
V Kumar, NA Rayan, M Muratani, S Lim, B Elanggovan, L Xin, T Lu, ...
Genome research 26 (5), 612-623, 2016
|In vivo genome-wide analysis of multiple tissues identifies gene regulatory networks, novel functions and downstream regulatory genes for Bapx1 and its co-regulation with Sox9 …|
S Chatterjee, V Sivakamasundari, SP Yap, P Kraus, V Kumar, X Xing, ...
BMC genomics 15 (1), 1072, 2014
|CellAtlasSearch: a scalable search engine for single cells|
D Srivastava, A Iyer, V Kumar, D Sengupta
Nucleic acids research 46 (W1), W141-W147, 2018
|A Role for RE‐1‐Silencing Transcription Factor in Embryonic Stem Cells Cardiac Lineage Specification|
I Aksoy, G Marcy, J Chen, U Divakar, V Kumar, D John‐Sanchez, ...
Stem Cells 34 (4), 860-872, 2016
|Genome wide binding (ChIP-Seq) of murine Bapx1 and Sox9 proteins in vivo and in vitro|
S Chatterjee, P Kraus, V Sivakamasundari, SP Yap, V Kumar, ...
Genomics Data 10, 51-53, 2016
|Nucleocapsid Protein of Hantaviruses (Bunyaviridae): Structure and Functions|
A Plyusnin, V Kumar, O Vapalahti, P Engelhardt
Structure-Based Study Of Viral Replication: (With CD-ROM), 553-570, 2008
|Gene expression profiles of Bapx1 expressing FACS sorted cells from wildtype and Bapx1-EGFP null mouse embryos|
S Chatterjee, V Sivakamasundari, P Kraus, SP Yap, V Kumar, ...
Genomics data 5, 103-105, 2015
|Distance preserving dimension reduction with local-topology based scaling for improved classification of Biomedical data-sets|
VK Karaj Khosla, Indra Prakash Jha