Francesco Gatto
Francesco Gatto
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Recon3D enables a three-dimensional view of gene variation in human metabolism
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ...
Nature biotechnology 36 (3), 272-281, 2018
Absolute quantification of protein and mRNA abundances demonstrate variability in gene-specific translation efficiency in yeast
PJ Lahtvee, BJ Sánchez, A Smialowska, S Kasvandik, IE Elsemman, ...
Cell systems 4 (5), 495-504. e5, 2017
Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma
F Gatto, I Nookaew, J Nielsen
Proceedings of the National Academy of Sciences 111 (9), E866-E875, 2014
Purine metabolism regulates DNA repair and therapy resistance in glioblastoma
W Zhou, Y Yao, AJ Scott, KW Romans, JJ Dresser, CK Werner, H Sun, ...
Nature Communications, 3811, 2020
Genome‐scale modeling of human metabolism–a systems biology approach
A Mardinoglu, F Gatto, J Nielsen
Biotechnology journal 8 (9), 985-996, 2013
Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism
F Gatto, H Miess, A Schulze, J Nielsen
Scientific reports 5 (1), 10738, 2015
Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma
A Limeta, B Ji, M Levin, F Gatto, J Nielsen
JCI insight 5 (23), 2020
The translational status of cancer liquid biopsies
S Bratulic, F Gatto, J Nielsen
Regenerative Engineering and Translational Medicine 7, 312-352, 2021
Glycosaminoglycan profiling in patients’ plasma and urine predicts the occurrence of metastatic clear cell renal cell carcinoma
F Gatto, N Volpi, H Nilsson, I Nookaew, M Maruzzo, A Roma, ...
Cell reports 15 (8), 1822-1836, 2016
Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome
A Feizi, F Gatto, M Uhlen, J Nielsen
NPJ systems biology and applications 3 (1), 22, 2017
Pan-cancer analysis of the metabolic reaction network
F Gatto, R Ferreira, J Nielsen
Metabolic engineering 57, 51-62, 2020
Noninvasive detection of any-stage cancer using free glycosaminoglycans
S Bratulic, A Limeta, S Dabestani, H Birgisson, G Enblad, K Stĺlberg, ...
Proceedings of the National Academy of Sciences 119 (50), e2115328119, 2022
Prognostic value of plasma and urine glycosaminoglycan scores in clear cell renal cell carcinoma
F Gatto, M Maruzzo, C Magro, U Basso, J Nielsen
Frontiers in oncology 6, 253, 2016
Plasma glycosaminoglycans as diagnostic and prognostic biomarkers in surgically treated renal cell carcinoma
F Gatto, KA Blum, SS Hosseini, M Ghanaat, M Kashan, F Maccari, ...
European urology oncology 1 (5), 364-377, 2018
Systematic analysis reveals that cancer mutations converge on deregulated metabolism of arachidonate and xenobiotics
F Gatto, A Schulze, J Nielsen
Cell reports 16 (3), 878-895, 2016
Accelerating the development and validation of liquid biopsy for early cancer screening and treatment tailoring
D Horgan, T Čufer, F Gatto, I Lugowska, D Verbanac, Â Carvalho, JA Lal, ...
Healthcare 10 (9), 1714, 2022
Analysis of normal levels of free glycosaminoglycans in urine and plasma in adults
S Bratulic, A Limeta, F Maccari, F Galeotti, N Volpi, M Levin, J Nielsen, ...
Journal of Biological Chemistry 298 (2), 2022
Kiwi: a tool for integration and visualization of network topology and gene-set analysis
L Väremo, F Gatto, J Nielsen
BMC bioinformatics 15, 1-6, 2014
The specificity of the malarial VAR2CSA protein for chondroitin sulfate depends on 4-O-sulfation and ligand accessibility
CB Spliid, AG Toledo, P Sanderson, Y Mao, F Gatto, T Gustavsson, ...
Journal of Biological Chemistry 297 (6), 2021
Exercise-mediated lowering of glutamine availability suppresses tumor growth and attenuates muscle wasting
KS Pedersen, F Gatto, B Zerahn, J Nielsen, BK Pedersen, P Hojman, ...
Iscience 23 (4), 2020
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