Shandar Ahmad
Title
Cited by
Cited by
Year
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information
S Ahmad, MM Gromiha, A Sarai
Bioinformatics 20 (4), 477-486, 2004
3832004
ASAView: database and tool for solvent accessibility representation in proteins
S Ahmad, M Gromiha, H Fawareh, A Sarai
BMC bioinformatics 5 (1), 51, 2004
2792004
PSSM-based prediction of DNA binding sites in proteins
S Ahmad, A Sarai
BMC bioinformatics 6 (1), 33, 2005
2632005
Real value prediction of solvent accessibility from amino acid sequence
S Ahmad, MM Gromiha, A Sarai
Proteins: Structure, Function, and Bioinformatics 50 (4), 629-635, 2003
2232003
Moment-based prediction of DNA-binding proteins
S Ahmad, A Sarai
Journal of molecular biology 341 (1), 65-71, 2004
1512004
Structural analysis of cation–π interactions in DNA binding proteins
MM Gromiha, C Santhosh, S Ahmad
International journal of biological macromolecules 34 (3), 203-211, 2004
1292004
NETASA: neural network based prediction of solvent accessibility
S Ahmad, MM Gromiha
Bioinformatics 18 (6), 819-824, 2002
1262002
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences
S Ahmad, MM Gromiha, A Sarai
Bioinformatics 19 (14), 1849-1851, 2003
1032003
Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network
A Malik, S Ahmad
BMC Structural Biology 7 (1), 1, 2007
962007
Neural network‐based prediction of transmembrane β‐strand segments in outer membrane proteins
MM Gromiha, S Ahmad, M Suwa
Journal of computational chemistry 25 (5), 762-767, 2004
922004
Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins
S Ahmad, O Keskin, A Sarai, R Nussinov
Nucleic acids research 36 (18), 5922-5932, 2008
852008
Partner-aware prediction of interacting residues in protein-protein complexes from sequence data
S Ahmad, K Mizuguchi
PLoS One 6 (12), e29104, 2011
772011
Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions
AP Hutchins, D Diez, Y Takahashi, S Ahmad, R Jauch, ML Tremblay, ...
Nucleic acids research 41 (4), 2155-2170, 2013
712013
TMBETA-NET: discrimination and prediction of membrane spanning β-strands in outer membrane proteins
MM Gromiha, S Ahmad, M Suwa
Nucleic acids research 33 (suppl_2), W164-W167, 2005
702005
uORFs, reinitiation and alternative translation start sites in human mRNAs
AV Kochetov, S Ahmad, V Ivanisenko, OA Volkova, NA Kolchanov, ...
FEBS letters 582 (9), 1293-1297, 2008
682008
Design and training of a neural network for predicting the solvent accessibility of proteins
S Ahmad, MM Gromiha
Journal of computational chemistry 24 (11), 1313-1320, 2003
682003
Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein− DNA Recognition
MJ Ara˙zo-Bravo, S Fujii, H Kono, S Ahmad, A Sarai
Journal of the American Chemical Society 127 (46), 16074-16089, 2005
632005
Application of residue distribution along the sequence for discriminating outer membrane proteins
MM Gromiha, S Ahmad, M Suwa
Computational biology and chemistry 29 (2), 135-142, 2005
562005
Classification of protein-DNA complexes based on structural descriptors
P Prabakaran, JG Siebers, S Ahmad, MM Gromiha, MG Singarayan, ...
Structure 14 (9), 1355-1367, 2006
472006
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein–DNA recognition
S Ahmad, H Kono, MJ Arauzo-Bravo, A Sarai
Nucleic acids research 34 (suppl_2), W124-W127, 2006
472006
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Articles 1–20