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Chris Dean
Chris Dean
Data Scientist, Mayo Clinic Hematology, Rochester, MN
Verified email at mayo.edu
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Cited by
Year
MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
3242017
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
2692020
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5, 1-13, 2017
712017
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
582018
Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies
MD Weinroth, AD Belk, C Dean, N Noyes, DK Dittoe, MJ Rothrock Jr, ...
Journal of animal science 100 (2), skab346, 2022
482022
Mobilization of antibiotic resistance: are current approaches for colocalizing resistomes and mobilomes useful?
IB Slizovskiy, K Mukherjee, C Boucher, NR Noyes
Frontiers in microbiology 11, 532630, 2020
392020
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 294, 2019
292019
Investigating the cow skin and teat canal microbiomes of the bovine udder using different sampling and sequencing approaches
CJ Dean, IB Slizovskiy, KK Crone, AX Pfennig, BJ Heins, LS Caixeta, ...
Journal of Dairy Science 104 (1), 644-661, 2021
232021
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. Microbiome 5: 142
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
102017
The microbiome of common bedding materials before and after use on commercial dairy farms
T Ray, TN Gaire, CJ Dean, S Rowe, SM Godden, NR Noyes
Animal Microbiome 4 (1), 18, 2022
92022
Hierarchical hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Commun Biol 2: 294
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
82019
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period. Front. Microbiol., 9: 1715
E Doster, P Rovira, RN Noyes, BA Burgess, X Yang, MD Weinroth, ...
62018
Investigation of intramammary infections in primiparous cows during early lactation on organic dairy farms
F Peña-Mosca, C Dean, V Machado, L Fernandes, P Pinedo, E Doster, ...
Journal of Dairy Science 106 (12), 9377-9392, 2023
42023
Evaluation of contamination in milk samples pooled from independently collected quarters within a laboratory setting
CJ Dean, F Peña-Mosca, T Ray, BJ Heins, VS Machado, PJ Pinedo, ...
Frontiers in Veterinary Science 9, 818778, 2022
42022
Tychus: a whole genome sequencing pipeline for assembly, annotation and phylogenetics of bacterial genomes
C Dean, N Noyes, S Lakin, P Rovira-Sanz, X Yang, K Belk, PS Morley, ...
bioRxiv, 283101, 2018
32018
Associations between early lactation intramammary infections and udder health and performance during the first 180 days in milk in first-lactation organic dairy cows
F Peña-Mosca, C Dean, L Fernandes, E Doster, K Sharpe, T Ray, ...
Journal of Dairy Science, 2023
12023
The impact of kit, environment and sampling contamination on the observed microbiome of bovine milk
CJ Dean, Y Deng, TJ Wehri, T Ray, F Peña-Mosca, BA Crooker, ...
bioRxiv, 2023.11. 07.566052, 2023
12023
In vitroantimicrobial activity of non-aureus StaphylococciandMammaliicocciagainstStaphylococcus aureusandStreptococcus uberisand their relationship with the …
TN Gaire, CJ Dean, D Manriquez, P Pinedo, N Noyes, LS Caixeta
2024
In vitro antimicrobial activity of non-aureus Staphylococci and Mammaliicocci against Staphylococcus aureus and Streptococcus uberis and their relationship …
F Peña Mosca, TN Gaire, CJ Dean, D Manriquez, P Pinedo, N Noyes, ...
bioRxiv, 2024.02. 01.578391, 2024
2024
Exploring associations between the teat apex metagenome and Staphylococcus aureus intramammary infection risk in primiparous cows under organic directives
CJ Dean, F Peña-Mosca, T Ray, TJ Wehri, K Sharpe, A Antunes Jr, ...
bioRxiv, 2023.09. 12.557435, 2023
2023
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