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Tanmoy Sanyal
Tanmoy Sanyal
Senior Scientist, Protein Design || Structural Biology
Verified email at amgen.com - Homepage
Title
Cited by
Cited by
Year
Coarse-grained models using local-density potentials optimized with the relative entropy: Application to implicit solvation
T Sanyal, MS Shell
The Journal of chemical physics 145 (3), 2016
1012016
Transferable coarse-grained models of liquid–liquid equilibrium using local density potentials optimized with the relative entropy
T Sanyal, MS Shell
The Journal of Physical Chemistry B 122 (21), 5678-5693, 2018
692018
Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape
FD Mast, PC Fridy, NE Ketaren, J Wang, EY Jacobs, JP Olivier, T Sanyal, ...
Elife 10, e73027, 2021
57*2021
Integrative analysis reveals unique structural and functional features of the Smc5/6 complex
Y Yu, S Li, Z Ser, T Sanyal, K Choi, B Wan, H Kuang, A Sali, A Kentsis, ...
Proceedings of the National Academy of Sciences 118 (19), e2026844118, 2021
392021
Evaporation-induced assembly of colloidal crystals
MP Howard, WF Reinhart, T Sanyal, MS Shell, A Nikoubashman, ...
The Journal of chemical physics 149 (9), 2018
352018
A hybrid, bottom-up, structurally accurate, Go-like coarse-grained protein model
T Sanyal, J Mittal, MS Shell
The Journal of chemical physics 151 (4), 2019
252019
Bayesian metamodeling of complex biological systems across varying representations
B Raveh, L Sun, KL White, T Sanyal, J Tempkin, D Zheng, B Kala, ...
Proceedings of the National Academy of Sciences of the United States of …, 2021
232021
Transferability of local density-assisted implicit solvation models for homogeneous fluid mixtures
D Rosenberger, T Sanyal, MS Shell, NFA van der Vegt
Journal of Chemical Theory and Computation 15 (5), 2881-2895, 2019
232019
Multiscale analysis of hypoxemia in methemoglobin anemia
T Sanyal, S Chakraborty
Mathematical Biosciences 241 (2), 167-180, 2013
22013
Micro-and meso-scale analyses for quantifying hypoxemia in methemoglobinemia
T Sanyal, S Chakraborty
Proceedings of the World Congress on Engineering 3, 2011
22011
Nanobody repertoire generated against the spike protein of ancestral SARS-CoV-2 remains efficacious against the rapidly evolving virus
NE Ketaren, FD Mast, PC Fridy, JP Olivier, T Sanyal, A Sali, BT Chait, ...
bioRxiv, 2023
12023
Multiscale Modelling and Simulation of simultaneous Oxygen and Nitric Oxide uptake in the Human Lungs and its application to Methemoglobin Anemia
T Sanyal, S Chakraborty
Computer Aided Chemical Engineering 30, 1372-1376, 2012
12012
Unique Binding and Stabilization Mechanisms Employed By and Engineered Into Nanobodies.
NE Ketaren, PC Fridy, V Malashkevich, T Sanyal, M Brilliantes, ...
bioRxiv, 2023.10. 22.563475, 2023
2023
Highly synergistic combinations of nanobodies that target SARS-CoV-2 reduce viral load in hACE2 transgenic mice
P Olivier, F Mast, P Fridy, N Ketaren, L Miller, T Sanyal, M Rout, B Chait, ...
The Journal of Biological Chemistry 299 (3), 104200, 2023
2023
Rigid-body assignment in integrative determination of protein complex structures
T Sanyal, A Sali
Biophysical Journal 121 (3), 31a, 2022
2022
Integrative Modeling of the Smc-5/6 Protein Complex
Y Yu, S Li, Z Ser, T Sanyal, B Wan, A Sali, A Kentsis, DIJ Patel, X Zhao
2021 AIChE Annual Meeting, 2021
2021
Nanobody Repertoires for Exposing Vulnerabilities of SARS-CoV-2 (preprint)
PC Fridy, NE Ketaren, J Wang, EY Jacobs, T Sanyal, KR Molloy, ...
2021
Relative entropy design of coarse-grained protein models
MS Shell, T Sanyal
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019
2019
Using the relative entropy to sample free energy landscapes with transferable coarse-grained models
MS Shell, T Sanyal
APS March Meeting Abstracts 2018, R20. 001, 2018
2018
Next-generation coarse-grained models for molecular dynamics simulations of fluid phase equilibria and protein biophysics using the relative entropy
T Sanyal
University of California, Santa Barbara, 2018
2018
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Articles 1–20