| New record of Megacapitula villosa and Paradictyoarthrinium diffractum from India A Prabhugaonkar, DJ Bhat Mushroom Research Foundation, Chiang Rai, Thailand, 2011 | 24 | 2011 |
| Phylogenetic placement of Bahusandhika, Cancellidium and Pseudoepicoccum (asexual Ascomycota) J Pratibha, A Prabhugaonkar, KD Hyde, DJ Bhat Phytotaxa 176 (1), 68–80-68–80, 2014 | 23 | 2014 |
| Dipcadi goaense (Hyacinthaceae), a new species from the foothills of the Western Ghats, India A Prabhugaonkar, US Yadav, MK Janarthanam Kew Bulletin 64, 743-746, 2009 | 21 | 2009 |
| Rattania setulifera, an undescribed endophytic hyphomycete on rattans from Western Ghats, India A Prabhugaonkar, DJ Bhat Mycotaxon, 2009 | 17 | 2009 |
| Multi-gene phylogeny of Pithomyces with the sexual morph of P. flavus Berk. and Broome. J Pratibha, A Prabhugaonkar Phytotax 218 (1), 84-90, 2015 | 15 | 2015 |
| First report of three redlisted tree species from swampy relics of Goa State, India A Prabhugaonkar, DK Mesta, MK Janarthanam Wildlife Information Liaison Development Society, Coimbatore, 2014 | 12 | 2014 |
| Torula goaensis, a new asexual ascomycetous fungus in Torulaceae J Pratibha, A Prabhugaonkar Webbia 72 (2), 171-175, 2017 | 8 | 2017 |
| Aureobasidium khasianum (Aureobasidiaceae) a novel species with distinct morphology. P Ashish, J Pratibha Phytotaxa 374 (3), 257-262, 2018 | 7 | 2018 |
| Isolation of Acrodontium crateriforme as a pitcher trap inquiline A Prabhugaonkar, J Pratibha Curr. Res. Environ. Appl. Mycol 7, 203-207, 2017 | 7 | 2017 |
| New record of Trichoglossum rasum from Asia A Prabhugaonkar, J Pratibha Mycosphere 8 (4), 583-591, 2017 | 5 | 2017 |
| Distribution and phylogeny of Mycosisymbrium cirrhosum J Pratibha, A Prabhugaonkar Guizhou Academy of Agricultural Sciences, 2016 | 4 | 2016 |
| Molecular phylogeny of Speiropsis pedatospora J Pratibha, DJ Bhat, A Prabhugaonkar Guizhou Key Laboratory of Agricultural Biotechnology, China, 2016 | 4 | 2016 |
| New record of Thysanorea papuana from India J Pratibha, A Prabhugaonkar Guizhou Academy of Agricultural Sciences, 2015 | 4 | 2015 |
| Studies on diversity and activity of microfungi associated with indigenous palms of Western Ghats, India A Prabhugaonkar Goa University, 2011 | 4 | 2011 |
| Extended distribution of Cassipourea ceylanica, an inland Rhizophoraceae A Prabhugaonkar, JRN Dessai, MK Janarthanam Indian Journal of Forestry, 2007 | 3 | 2007 |
| Notes on two rare fungal isolates from Western Ghats, Goa India J Pratibha, A Prabhugaonkar Kavaka 49, 28-31, 2017 | 2 | 2017 |
| Fusiconidium indicumMelanommataceae a novel species of asexual Ascomycetes. J Pratibha, P Ashish, AA Mao Phytotax 326 (2), 108-114, 2017 | 2 | 2017 |
| Chloranthus nervosusvar. khasiana (Chloranthaceae) a new variety from Meghalaya and a new record of species to Indian flora AV Prabhugaonkar, M Murugesan, AA Mao Pleione 11 (1), 149, 2017 | 2 | 2017 |
| Nomenclature notes on the genus Salacia L. (Celastraceae) in India DC Jadhav, AV Prabhugaonkar, MD Nandikar Phytotaxa 265 (2), 121–130-121–130, 2016 | 1 | 2016 |
| Further additions to the flora of Goa A Prabhugaonkar, MM Sardesai, MK Janarthanam Society for Economic and Taxonomic Botany and Scientific Publishers, Jodhpur, 2009 | 1 | 2009 |
