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Shubham Tripathi
Shubham Tripathi
Department of Immunobiology, Yale University
Verified email at yale.edu - Homepage
Title
Cited by
Cited by
Year
Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing
AP Deshmukh, SV Vasaikar, K Tomczak, S Tripathi, P Den Hollander, ...
Proceedings of the National Academy of Sciences 118 (19), e2102050118, 2021
1552021
A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells
S Tripathi, P Chakraborty, H Levine, MK Jolly
PLoS computational biology 16 (2), e1007619, 2020
972020
Comparative study of transcriptomics-based scoring metrics for the epithelial-hybrid-mesenchymal spectrum
P Chakraborty, JT George, S Tripathi, H Levine, MK Jolly
Frontiers in bioengineering and biotechnology 8, 220, 2020
762020
The physics of cellular decision making during epithelial–mesenchymal transition
S Tripathi, H Levine, MK Jolly
Annual Review of Biophysics 49, 1-18, 2020
742020
Quantifying cancer epithelial-mesenchymal plasticity and its association with stemness and immune response
D Jia, X Li, F Bocci, S Tripathi, Y Deng, MK Jolly, JN Onuchic, H Levine
Journal of clinical medicine 8 (5), 725, 2019
682019
Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer
D Jia, JH Park, H Kaur, KH Jung, S Yang, S Tripathi, M Galbraith, Y Deng, ...
British Journal of Cancer 124 (12), 1902-1911, 2021
612021
Biological networks regulating cell fate choice are minimally frustrated
S Tripathi, DA Kessler, H Levine
Physical Review Letters 125 (8), 088101, 2020
352020
Epigenetic feedback and stochastic partitioning during cell division can drive resistance to EMT
W Jia, S Tripathi, P Chakraborty, A Chedere, A Rangarajan, H Levine, ...
Oncotarget 11 (27), 2611, 2020
282020
DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases
S Tripathi, S Brahmachari, JN Onuchic, H Levine
Nucleic acids research 50 (3), 1269-1279, 2022
182022
Mathematical modeling of plasticity and heterogeneity in EMT
S Tripathi, J Xing, H Levine, MK Jolly
The Epithelial-to Mesenchymal Transition: Methods and Protocols, 385-413, 2021
162021
Analysis of hierarchical organization in gene expression networks reveals underlying principles of collective tumor cell dissemination and metastatic aggressiveness of …
S Tripathi, MK Jolly, WA Woodward, H Levine, MW Deem
arXiv preprint arXiv:1711.09111, 2017
142017
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology
S Tripathi, DA Kessler, H Levine
Proceedings of the National Academy of Sciences 120 (1), e2216109120, 2023
112023
The standard genetic code facilitates exploration of the space of functional nucleotide sequences
S Tripathi, MW Deem
bioRxiv, 225003, 2017
92017
Hierarchy in gene expression is predictive of risk, progression, and outcome in adult acute myeloid leukemia
S Tripathi, MW Deem
Physical biology 12 (1), 016016, 2015
82015
Epigenetic factor competition reshapes the EMT landscape
MA Al-Radhawi, S Tripathi, Y Zhang, ED Sontag, H Levine
Proceedings of the National Academy of Sciences 119 (42), e2210844119, 2022
72022
A mechanistic modeling framework reveals the key principles underlying tumor metabolism
S Tripathi, JH Park, S Pudakalakatti, PK Bhattacharya, BA Kaipparettu, ...
PLOS Computational Biology 18 (2), e1009841, 2022
62022
Systems immunology of regulatory T cells: can one circuit explain it all?
S Tripathi, JS Tsang, K Park
Trends in Immunology, 2023
22023
Reconstruction of single cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition
YC Cheng, Y Zhang, S Tripathi, BV Harshavardhan, MK Jolly, ...
bioRxiv, 2023.09. 19.558325, 2023
12023
Role of an IL-15-driven feedback loop in antigen-independent cytotoxic T cell response
S Tripathi, C Liu, W Lau, R Sparks, J Tsang
Bulletin of the American Physical Society, 2024
2024
Gene regulatory interactions limit the gene expression diversity
O Levy, S Tripathi, SD Pope, YY Liu, R Medzhitov
arXiv preprint arXiv:2311.15503, 2023
2023
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Articles 1–20