Mukesh Jain
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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
RK Patel, M Jain
PLoS ONE 7 (2), e30619, 2012
Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
M Jain, A Nijhawan, AK Tyagi, JP Khurana
Biochemical and biophysical research communications 345 (2), 646-651, 2006
F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
M Jain, A Nijhawan, R Arora, P Agarwal, S Ray, P Sharma, S Kapoor, ...
Plant physiology 143 (4), 1467-1483, 2007
Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice
A Nijhawan, M Jain, AK Tyagi, JP Khurana
Plant physiology 146 (2), 333, 2008
De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification
R Garg, RK Patel, AK Tyagi, M Jain
DNA research 18 (1), 53-63, 2011
A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)
M Jain, G Misra, RK Patel, P Priya, S Jhanwar, AW Khan, N Shah, ...
The Plant Journal, 2013
Transcript profiling reveals diverse roles of auxin‐responsive genes during reproductive development and abiotic stress in rice
M Jain, JP Khurana
The FEBS journal 276 (11), 3148-3162, 2009
Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa)
M Jain, N Kaur, R Garg, JK Thakur, AK Tyagi, JP Khurana
Functional & integrative genomics 6, 47-59, 2006
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development
R Garg, RK Patel, S Jhanwar, P Priya, A Bhattacharjee, G Yadav, S Bhatia, ...
Plant Physiology 156 (4), 1661-1678, 2011
Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa)
M Jain, AK Tyagi, JP Khurana
Genomics 88 (3), 360-371, 2006
Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses
M Jain, C Ghanashyam, A Bhattacharjee
BMC genomics 11, 1-17, 2010
The CRISPR–Cas system for plant genome editing: advances and opportunities
V Kumar, M Jain
Journal of experimental botany 66 (1), 47-57, 2015
The auxin-responsive GH3 gene family in rice (Oryza sativa)
M Jain, N Kaur, AK Tyagi, JP Khurana
Functional & integrative genomics 6, 36-46, 2006
Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response
R Garg, VVS Narayana Chevala, R Shankar, M Jain
Scientific reports 5 (1), 14922, 2015
Transcriptome analyses reveal genotype-and developmental stage-specific molecular responses to drought and salinity stresses in chickpea
R Garg, R Shankar, B Thakkar, H Kudapa, L Krishnamurthy, N Mantri, ...
Scientific reports 6 (1), 19228, 2016
Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses
R Shankar, A Bhattacharjee, M Jain
Scientific reports 6 (1), 23719, 2016
Over-expression of a rice tau class glutathione s-transferase gene improves tolerance to salinity and oxidative stresses in Arabidopsis
R Sharma, A Sahoo, R Devendran, M Jain
PloS one 9 (3), e92900, 2014
Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.)
R Garg, A Sahoo, AK Tyagi, M Jain
Biochemical and biophysical research communications 396 (2), 283-288, 2010
Next-generation sequencing technologies for gene expression profiling in plants
M Jain
Briefings in Functional Genomics, 2012
Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and Submergence Tolerance Factors
R Garg, M Verma, S Agrawal, R Shankar, M Majee, M Jain
DNA research 21 (1), 69-84, 2014
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