Keyao Pan

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Citations	765	341
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Mark BatheBiological Engineering, MITVerified email at mit.edu
Michael DeemCurrently General Partner at SmartHealth Catalyzer and CEO of a startupVerified email at mwdeem.org
Robert H. SingerAlbert Einstein College of MedicineVerified email at einsteinmed.edu
Brian Patrick EnglishHHMI/ Janelia Research CampusVerified email at janelia.hhmi.org
Zachary BarryNovartis Institutes for BioMedical ResearchVerified email at mit.edu
Hao YanMilton D. Gilick Distinguished Professor in Chemistry and Biochemistry, Arizona State UniversityVerified email at asu.edu
Do-Nyun KimSeoul National UniversityVerified email at snu.ac.kr
Zachary B. KatzGenentechVerified email at gene.com
Kuan-chung SuPostdoc, Whitehead InstituteVerified email at wi.mit.edu
Iain CheesemanWhitehead Institute and Department of Biology, MITVerified email at wi.mit.edu
Fei ZhangAssistant Professor, Department of Chemistry, Rutgers UniversityVerified email at rutgers.edu
Lun YangMITVerified email at mit.edu
Peter L NaraKeystone Bio Inc.Verified email at keystonebio.com
Klaus-Jürgen BatheProfessor of Mechanical Engineering, MITVerified email at mit.edu
Reza Sharifi SedehMIT/FacebookVerified email at mit.edu
William P. BrickerAssistant Professor, Chemical and Biological Engineering, University of New MexicoVerified email at unm.edu
Oskar HallatschekEvolutionary Dynamics and Biophysics Group, UC BerkeleyVerified email at berkeley.edu
Dieter HeermannProfessor of Physics, Heidelberg UniversityVerified email at tphys.uni-heidelberg.de
Nicolas P. D. SawayaResearch Scientist, Intel CorporationVerified email at intel.com
Remi VenezianoAssistant Professor, Department of Bioengineering, George Mason UniversityVerified email at gmu.edu

Keyao Pan

Senior Postdoctoral Associate, Massachusetts Institute of Technology

Verified email at mit.edu - Homepage

Machine Learning Computational physics DNA DNA nanotechnology Computational biology


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Inferring transient particle transport dynamics in live cells N Monnier, Z Barry, HY Park, KC Su, Z Katz, BP English, A Dey, K Pan, ... Nature methods 12 (9), 838-840, 2015	165	2015
The epitope regions of H1-subtype influenza A, with application to vaccine efficacy MW Deem, K Pan Protein Engineering, Design & Selection 22 (9), 543-546, 2009	139	2009
Lattice-free prediction of three-dimensional structure of programmed DNA assemblies K Pan, DN Kim, F Zhang, MR Adendorff, H Yan, M Bathe Nature communications 5 (1), 5578, 2014	132	2014
A novel sequence-based antigenic distance measure for H1N1, with application to vaccine effectiveness and the selection of vaccine strains K Pan, KC Subieta, MW Deem Protein Engineering, Design & Selection 24 (3), 291-299, 2011	60	2011
Structure-based model for light-harvesting properties of nucleic acid nanostructures K Pan, E Boulais, L Yang, M Bathe Nucleic acids research 42 (4), 2159-2170, 2014	58	2014
Quantifying selection and diversity in viruses by entropy methods, with application to the haemagglutinin of H3N2 influenza K Pan, MW Deem Journal of the Royal Society Interface 8 (64), 1644-1653, 2011	47	2011
Understanding original antigenic sin in influenza with a dynamical system K Pan PLoS One 6 (8), e23910, 2011	33	2011
Structure and conformational dynamics of scaffolded DNA origami nanoparticles K Pan, WP Bricker, S Ratanalert, M Bathe Nucleic acids research 45 (11), 6284-6298, 2017	32	2017
Evolution of H3N2 influenza virus in a guinea pig model J Long, RV Bushnell, JK Tobin, K Pan, MW Deem, PL Nara, GJ Tobin PLoS One 6 (7), e20130, 2011	29	2011
Selective pressure to increase charge in immunodominant epitopes of the H3 hemagglutinin influenza protein K Pan, J Long, H Sun, GJ Tobin, PL Nara, MW Deem Journal of molecular evolution 72, 90-103, 2011	27	2011
Computing nonequilibrium conformational dynamics of structured nucleic acid assemblies RS Sedeh, K Pan, MR Adendorff, O Hallatschek, KJ Bathe, M Bathe Journal of Chemical Theory and Computation 12 (1), 261-273, 2016	23	2016
Comment on Ndifon et al,“On the use of hemagglutination-inhibition for influenza surveillance: Surveillance data are predictive of influenza vaccine effectiveness” K Pan, MW Deem Vaccine 27 (37), 5033, 2009	11	2009
Predicting fixation tendencies of the H3N2 influenza virus by free energy calculation K Pan, MW Deem Journal of chemical theory and computation 7 (5), 1259-1272, 2011	6	2011
A multi-scale model for correlation in B cell VDJ usage of zebrafish K Pan, MW Deem Physical biology 8 (5), 055006, 2011	2	2011
Biophysical Modeling of Nucleic Acid Nanostructure Solution Shape and Stability DN Kim, MR Adendorff, K Pan, M Bathe Biophysical Journal 104 (2), 28a, 2013	1	2013
Multi-Scale Structure and Conformational Dynamics of Scaffolded DNA Origami Nanoparticles W Bricker, K Pan, M Bathe Biophysical Journal 112 (3), 70a-71a, 2017		2017
Techniques for Controlling Spatial Structure of Nucleic Acid Structures Based on Lattice-free, Three Dimensional Junction Coordinates M Bathe, K Pan, D Kim US Patent 14/874,417, 2016		2016
Modeling Secondary Structural Elements in Programmed DNA Assemblies K Pan, M Bathe Biophysical Journal 110 (3), 183a, 2016		2016
Structure-Based Design, Synthesis, and Characterization of Custom DNA Nanoparticles S Ratanalert, R Veneziano, K Zhang, K Pan, F Zhang, W Chiu, H Yan, ... Biophysical Journal 110 (3), 565a, 2016		2016
Programming Nanophotonic Materials with DNA É Boulais, W Sun, N Sawaya, Y Hakobyan, W Wang, A Guan, K Pan, ... Biophysical Journal 108 (2), 605a, 2015		2015

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