Jie Ren
Jie Ren
Research Scientist at Google Brain
Verified email at google.com - Homepage
Cited by
Cited by
Can you trust your model's uncertainty? Evaluating predictive uncertainty under dataset shift
Y Ovadia, E Fertig, J Ren, Z Nado, D Sculley, S Nowozin, JV Dillon, ...
arXiv preprint arXiv:1906.02530, 2019
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun
Microbiome 5 (1), 1-20, 2017
Likelihood ratios for out-of-distribution detection
J Ren, PJ Liu, E Fertig, J Snoek, R Poplin, MA DePristo, JV Dillon, ...
arXiv preprint arXiv:1906.02845, 2019
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
K Song, J Ren, G Reinert, M Deng, MS Waterman, F Sun
Briefings in bioinformatics 15 (3), 343-353, 2014
Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun
Nucleic acids research 45 (1), 39-53, 2017
Comparison of metagenomic samples using sequence signatures
B Jiang, K Song, J Ren, M Deng, F Sun, X Zhang
BMC genomics 13 (1), 1-17, 2012
Identifying viruses from metagenomic data using deep learning
J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ...
Quantitative Biology, 1-14, 2020
Alignment-free sequence comparison based on next-generation sequencing reads
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
Journal of computational biology 20 (2), 64-79, 2013
Alignment-free sequence analysis and applications
J Ren, X Bai, YY Lu, K Tang, Y Wang, G Reinert, F Sun
Annual Review of Biomedical Data Science 1, 93-114, 2018
CAFE: aCcelerated Alignment-FrEe sequence analysis
YY Lu, K Tang, J Ren, JA Fuhrman, MS Waterman, F Sun
Nucleic acids research 45 (W1), W554-W559, 2017
Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients
DJ Nusbaum, F Sun, J Ren, Z Zhu, N Ramsy, N Pervolarakis, S Kunde, ...
FEMS microbiology ecology 94 (9), fiy133, 2018
Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics
J Ren, K Song, M Deng, G Reinert, CH Cannon, F Sun
Bioinformatics 32 (7), 993-1000, 2016
Prediction of virus-host infectious association by supervised learning methods
M Zhang, L Yang, J Ren, NA Ahlgren, JA Fuhrman, F Sun
BMC bioinformatics 18 (3), 143-154, 2017
Alignment-free transcriptomic and metatranscriptomic comparison using sequencing signatures with variable length markov chains
W Liao, J Ren, K Wang, S Wang, F Zeng, Y Wang, F Sun
Scientific reports 6 (1), 1-15, 2016
Multiple alignment-free sequence comparison
J Ren, K Song, F Sun, M Deng, G Reinert
Bioinformatics 29 (21), 2690-2698, 2013
MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations
Z Zhu, J Ren, S Michail, F Sun
Genome biology 20 (1), 1-13, 2019
A network-based integrated framework for predicting virus–prokaryote interactions
W Wang, J Ren, K Tang, E Dart, JC Ignacio-Espinoza, JA Fuhrman, ...
NAR genomics and bioinformatics 2 (2), lqaa044, 2020
SummAE: Zero-shot abstractive text summarization using length-agnostic auto-encoders
PJ Liu, YA Chung, J Ren
arXiv preprint arXiv:1910.00998, 2019
Detection of colorectal cancer in circulating cell-free DNA by methylated CpG tandem amplification and sequencing
J Li, X Zhou, X Liu, J Ren, J Wang, W Wang, Y Zheng, X Shi, T Sun, Z Li, ...
Clinical chemistry 65 (7), 916-926, 2019
Alignment-free sequence comparison based on next generation sequencing reads
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
Annual International Conference on Research in Computational Molecular …, 2012
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