Timothy M Beissinger
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Marker density and read depth for genotyping populations using genotyping-by-sequencing
TM Beissinger, CN Hirsch, RS Sekhon, JM Foerster, JM Johnson, ...
Genetics 193 (4), 1073-1081, 2013
Recent demography drives changes in linked selection across the maize genome
TM Beissinger, L Wang, K Crosby, A Durvasula, MB Hufford, ...
Nature plants 2 (7), 1-7, 2016
The interplay of demography and selection during maize domestication and expansion
L Wang, TM Beissinger, A Lorant, C Ross-Ibarra, J Ross-Ibarra, ...
Genome biology 18 (1), 1-13, 2017
Defining window-boundaries for genomic analyses using smoothing spline techniques
TM Beissinger, GJM Rosa, SM Kaeppler, D Gianola, N de Leon
Genetics Selection Evolution 47 (1), 30, 2015
A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number
TM Beissinger, CN Hirsch, B Vaillancourt, S Deshpande, K Barry, ...
Genetics 196 (3), 829-840, 2014
Insights into the effects of long-term artificial selection on seed size in maize
CN Hirsch, SA Flint-Garcia, TM Beissinger, SR Eichten, S Deshpande, ...
Genetics 198 (1), 409-421, 2014
Parallel Markov chain Monte Carlo-bridging the gap to high-performance Bayesian computation in animal breeding and genetics
XL Wu, C Sun, TM Beissinger, GJM Rosa, KA Weigel, N de Leon Gatti, ...
Genetics Selection Evolution 44 (1), 29, 2012
Shared genomic regions between derivatives of a large segregating population of maize identified using bulked segregant analysis sequencing and traditional linkage analysis
NJ Haase, T Beissinger, CN Hirsch, B Vaillancourt, S Deshpande, K Barry, ...
G3: Genes, Genomes, Genetics 5 (8), 1593-1602, 2015
Integrated genome-scale analysis identifies novel genes and networks underlying senescence in maize
RS Sekhon, C Saski, R Kumar, BS Flinn, F Luo, TM Beissinger, ...
The Plant Cell 31 (9), 1968-1989, 2019
A primer on high-throughput computing for genomic selection
XL Wu, TM Beissinger, S Bauck, B Woodwart, GJM Rosa, N De Leon Gatti, ...
Frontiers in genetics 2, 4, 2011
Large effect QTL explain natural phenotypic variation for the developmental timing of vegetative phase change in maize (Zea mays L.)
JM Foerster, T Beissinger, N de Leon, S Kaeppler
Theoretical and Applied Genetics 128 (3), 529-538, 2015
MeSH-informed enrichment analysis and MeSH-guided semantic similarity among functional terms and gene products in chicken
G Morota, TM Beissinger, F Peñagaricano
G3: Genes, Genomes, Genetics 6 (8), 2447-2453, 2016
Comparing different statistical models and multiple testing corrections for association mapping in soybean and maize
AS Kaler, JD Gillman, T Beissinger, LC Purcell
Frontiers in Plant Science 10, 1794, 2020
A simple test identifies selection on complex traits
T Beissinger, J Kruppa, D Cavero, NT Ha, M Erbe, H Simianer
Genetics 209 (1), 321-333, 2018
Using the variability of linkage disequilibrium between subpopulations to infer sweeps and epistatic selection in a diverse panel of chickens
TM Beissinger, M Gholami, M Erbe, S Weigend, A Weigend, N De Leon, ...
Heredity 116 (2), 158-166, 2016
Medical subject heading (MeSH) annotations illuminate maize genetics and evolution
TM Beissinger, G Morota
Plant methods 13 (1), 8, 2017
Recent demography drives changes in linked selection across the maize genome. Nat. Plants 2: 16084
TM Beissinger, L Wang, K Crosby, A Durvasula, MB Hufford, ...
Selection for silage yield and composition did not affect genomic diversity within the Wisconsin Quality Synthetic maize population
AJ Lorenz, TM Beissinger, RR Silva, N de Leon
G3: Genes, Genomes, Genetics 5 (4), 541-549, 2015
Parallel-BayesCpC on OSG: Grid-enabled High-throughput computing for genomic selection in practice
XL Wu, O Hayrettin, H Duan, T Beissinger, S Bauck, B Woodward, ...
Proceedings of the Plant and Animal Genome XX Conference, 14-18, 2012
Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs
A Gyawali, V Shrestha, KE Guill, S Flint-Garcia, TM Beissinger
BMC plant biology 19 (1), 412, 2019
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