Philipp Angerer

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Fabian J TheisHelmholtz Munich, Technical University of MunichVerified email at helmholtz-muenchen.de
Alex Wolflamin.aiVerified email at lamin.ai
Carsten MarrInstitute of AI for Health, Helmholtz Zentrum MünchenVerified email at helmholtz-muenchen.de
Laleh HaghverdiBIMSB-MDCVerified email at mdc-berlin.de
Florian BuettnerFrankfurt University/DKFZVerified email at med.uni-frankfurt.de
Lukas SimonBaylor College of MedicineVerified email at bcm.edu
Maren BüttnerSenior Data Scientist at Calico Life SciencesVerified email at calicolabs.com
David Sebastian FischerBroad Institute of MIT and HarvardVerified email at broadinstitute.org
Sophie TritschlerCellarity, Helmholtz Zentrum MünchenVerified email at cellarity.com
Fatma UzbasHelmholtz Center Munich, GermanyVerified email at alumni.sabanciuniv.edu

Philipp Angerer

Software Developer, Cellarity

Verified email at cellarity.com - Homepage

Single Cell Transcriptomics Visualisation Dimension Reduction


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SCANPY: large-scale single-cell gene expression data analysis FA Wolf, P Angerer, FJ Theis Genome biology 19, 1-5, 2018	4469	2018
destiny: diffusion maps for large-scale single-cell data in R P Angerer, L Haghverdi, M Büttner, FJ Theis, C Marr, F Buettner Bioinformatics 32 (8), 1241-1243, 2016	556	2016
LocTree3 prediction of localization T Goldberg, M Hecht, T Hamp, T Karl, G Yachdav, N Ahmed, U Altermann, ... Nucleic acids research 42 (W1), W350-W355, 2014	316	2014
Single cells make big data: new challenges and opportunities in transcriptomics P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis Current opinion in systems biology 4, 85-91, 2017	206	2017
anndata: Annotated data I Virshup, S Rybakov, FJ Theis, P Angerer, FA Wolf BioRxiv, 2021.12. 16.473007, 2021	90	2021
BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis F Uzbas, F Opperer, C Sönmezer, D Shaposhnikov, S Sass, C Krendl, ... Genome biology 20 (1), 1-16, 2019	20	2019
Scanpy for analysis of large-scale single-cell gene expression data FA Wolf, P Angerer, FJ Theis bioRxiv, 174029, 2017	12	2017
Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data P Angerer, DS Fischer, FJ Theis, A Scialdone, C Marr Bioinformatics 36 (15), 4291-4295, 2020	11	2020
FASTGenomics: An analytical ecosystem for single-cell RNA sequencing data CJ Scholz, P Biernat, M Becker, K Baßler, P Günther, J Balfer, H Dickten, ... bioRxiv, 272476, 2018	10	2018
Scanpy for large-scale single-cell analysis FA Wolf, P Angerer, L Simon, FJ Theis	2	2017
MetaMap, an interactive webtool for the exploration of metatranscriptomic reads in human disease-related RNA-seq data LM Simon, G Tsitsiridis, P Angerer, FJ Theis bioRxiv, 425439, 2018	1	2018
destiny P Angerer, L Haghverdi, M Büttner, FJ Theis, C Marr, F Buettner, ...

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