Rasmus Nielsen
Title
Cited by
Cited by
Year
A metagenome-wide association study of gut microbiota in type 2 diabetes
J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ...
Nature 490 (7418), 55-60, 2012
44482012
A draft sequence of the Neandertal genome
RE Green, J Krause, AW Briggs, T Maricic, U Stenzel, M Kircher, ...
science 328 (5979), 710-722, 2010
37592010
Bayesian inference of phylogeny and its impact on evolutionary biology
JP Huelsenbeck, F Ronquist, R Nielsen, JP Bollback
science 294 (5550), 2310-2314, 2001
29132001
Codon-substitution models for heterogeneous selection pressure at amino acid sites
Z Yang, R Nielsen, N Goldman, AMK Pedersen
Genetics 155 (1), 431-449, 2000
24252000
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
nature 450 (7167), 203, 2007
20122007
Bayes empirical Bayes inference of amino acid sites under positive selection
Z Yang, WSW Wong, R Nielsen
Molecular biology and evolution 22 (4), 1107-1118, 2005
19872005
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
R Nielsen, Z Yang
Genetics 148 (3), 929-936, 1998
17441998
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
J Zhang, R Nielsen, Z Yang
Molecular biology and evolution 22 (12), 2472-2479, 2005
15732005
Molecular signatures of natural selection
R Nielsen
Annu. Rev. Genet. 39, 197-218, 2005
15612005
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
J Hey, R Nielsen
Genetics 167 (2), 747-760, 2004
15182004
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
Z Yang, R Nielsen
Molecular biology and evolution 17 (1), 32-43, 2000
14822000
Distinguishing migration from isolation: a Markov chain Monte Carlo approach
R Nielsen, J Wakeley
Genetics 158 (2), 885-896, 2001
14402001
Genotype and SNP calling from next-generation sequencing data
R Nielsen, JS Paul, A Albrechtsen, YS Song
Nature Reviews Genetics 12 (6), 443-451, 2011
13992011
Sequencing of 50 human exomes reveals adaptation to high altitude
X Yi, Y Liang, E Huerta-Sanchez, X Jin, ZXP Cuo, JE Pool, X Xu, H Jiang, ...
science 329 (5987), 75-78, 2010
12832010
Evolutionary and biomedical insights from the rhesus macaque genome
RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ...
science 316 (5822), 222-234, 2007
12742007
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
Z Yang, R Nielsen
Molecular biology and evolution 19 (6), 908-917, 2002
12672002
The sequence and de novo assembly of the giant panda genome
R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ...
Nature 463 (7279), 311-317, 2010
11942010
Population genomics of bronze age Eurasia
ME Allentoft, M Sikora, KG Sjögren, S Rasmussen, M Rasmussen, ...
Nature 522 (7555), 167-172, 2015
11292015
ANGSD: analysis of next generation sequencing data
TS Korneliussen, A Albrechtsen, R Nielsen
BMC bioinformatics 15 (1), 1-13, 2014
11212014
The diploid genome sequence of an Asian individual
J Wang, W Wang, R Li, Y Li, G Tian, L Goodman, W Fan, J Zhang, J Li, ...
Nature 456 (7218), 60-65, 2008
10882008
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