Soumyadeep Nandi
Soumyadeep Nandi
Data Science and Computational Biology Center, Amity University Haryana
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HMM-ModE–Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences
PK Srivastava, DK Desai, S Nandi, AM Lynn
BMC bioinformatics 8 (1), 1-17, 2007
A genome-wide steroid response study of the major human fungal pathogen Candida albicans
D Banerjee, N Martin, S Nandi, S Shukla, A Dominguez, ...
Mycopathologia 164, 1-17, 2007
Serological microarray for a paradoxical diagnostic of Whipple’s disease
CJ Bonhomme, P Renesto, S Nandi, AM Lynn, D Raoult
European journal of clinical microbiology & infectious diseases 27, 959-968, 2008
Comparison of theoretical proteomes: identification of COGs with conserved and variable pI within the multimodal pI distribution
S Nandi, N Mehra, AM Lynn, A Bhattacharya
BMC genomics 6 (1), 1-12, 2005
Discovery, optimization and validation of an optimal DNA-binding sequence for the Six1 homeodomain transcription factor
Y Liu, S Nandi, A Martel, A Antoun, I Ioshikhes, A Blais
Nucleic acids research 40 (17), 8227-8239, 2012
ModEnzA: accurate identification of metabolic enzymes using function specific profile HMMs with optimised discrimination threshold and modified emission probabilities
DK Desai, S Nandi, PK Srivastava, AM Lynn
Advances in bioinformatics 2011, 2011
Alignment-free method for DNA sequence clustering using Fuzzy integral similarity
AK Saw, G Raj, M Das, NC Talukdar, BC Tripathy, S Nandi
Scientific reports 9 (1), 3753, 2019
Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factors
S Nandi, A Blais, I Ioshikhes
Nucleic acids research 41 (19), 8822-8841, 2013
Optimizing the GATA-3 position weight matrix to improve the identification of novel binding sites
S Nandi, I Ioshikhes
BMC genomics 13, 1-17, 2012
ProkSeq for complete analysis of RNA-Seq data from prokaryotes
AKMF Mahmud, N Delhomme, S Nandi, M Fällman
Bioinformatics 37 (1), 126-128, 2021
Alignment-free similarity analysis for protein sequences based on fuzzy integral
AK Saw, BC Tripathy, S Nandi
Scientific reports 9 (1), 2775, 2019
PTE, a novel module to target Polycomb Repressive Complex 1 to the human cyclin D2 (CCND2) oncogene
SR Cameron, S Nandi, TG Kahn, JI Barrasa, P Stenberg, YB Schwartz
Journal of Biological Chemistry 293 (37), 14342-14358, 2018
Alternatives of Buchholz relay and more robust schemes for transformer internal fault protection
N Kumar, S Majumdar, V Prakash, T Mulo, S Nandi
Proc. 3rd Int. Conf. on Innovations in Computers, Information and …, 2012
Fuzzy code on RNA secondary structure
AK Saw, S Nandi, BC Tripathy
International Journal of Pure and Applied Mathematics 114 (3), 483-501, 2017
Identification of the conserved long non-coding RNAs in myogenesis
A Bhattacharya, S Champramary, T Tripathi, D Thakur, I Ioshikhes, ...
BMC genomics 22 (1), 1-19, 2021
PTE, a novel module of mammalian Polycomb Response Elements
SR Cameron, S Nandi, TG Kahn, JI Barrasa, P Stenberg, YB Schwartz
bioRxiv, 2017
Combined promoter-capture Hi-C and Hi-C analysis reveals a fine-tuned regulation of 3D chromatin architecture in colorectal cancer
AK Saw, A Madhok, A Bhattacharya, S Nandi, S Galande
bioRxiv, 2022.11. 08.515643, 2022
Detection of differential expression of miRNAs in computerized tomography-guided lung biopsy
A Singh, R Kant, S Nandi, N Husain, M Naithani, AA Mirza, TS Saluja, ...
Journal of Cancer Research and Therapeutics 18 (1), 231-239, 2022
Exploring a Drosophila Transcription Factor Interaction Network to Identify Cis-Regulatory Modules
AKMF Mahmud, D Yang, P Stenberg, I Ioshikhes, S Nandi
Journal of Computational Biology 27 (8), 1313-1328, 2020
ProkSeq for complete analysis of RNA-Seq data from prokaryotes
Bioinformatics, 2020
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