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José L. McFaline-Figueroa
José L. McFaline-Figueroa
Assistant Professor of Biomedical Engineering, Columbia University
Verified email at columbia.edu - Homepage
Title
Cited by
Cited by
Year
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ...
Science 361 (6409), 1380-1385, 2018
7432018
DNA damage induced by chronic inflammation contributes to colon carcinogenesis in mice
LB Meira, JM Bugni, SL Green, CW Lee, B Pang, D Borenshtein, ...
The Journal of clinical investigation 118 (7), 2516-2525, 2008
6622008
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ...
Molecular cell 71 (5), 858-871. e8, 2018
6012018
A genome-wide framework for mapping gene regulation via cellular genetic screens
M Gasperini, AJ Hill, JL McFaline-Figueroa, B Martin, S Kim, MD Zhang, ...
Cell 176 (1), 377-390. e19, 2019
4922019
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana
K Jean-Baptiste, JL McFaline-Figueroa, CM Alexandre, MW Dorrity, ...
The plant cell 31 (5), 993-1011, 2019
2972019
Gut microbes define liver cancer risk in mice exposed to chemical and viral transgenic hepatocarcinogens
JG Fox, Y Feng, EJ Theve, AR Raczynski, JLA Fiala, AL Doernte, ...
Gut 59 (01), 88-97, 2010
2682010
Infection-induced colitis in mice causes dynamic and tissue-specific changes in stress response and DNA damage leading to colon cancer
A Mangerich, CG Knutson, NM Parry, S Muthupalani, W Ye, E Prestwich, ...
Proceedings of the National Academy of Sciences 109 (27), E1820-E1829, 2012
2592012
Massively multiplex chemical transcriptomics at single-cell resolution
SR Srivatsan, JL McFaline-Figueroa, V Ramani, L Saunders, J Cao, ...
Science 367 (6473), 45-51, 2020
2392020
Continuous elimination of oxidized nucleotides is necessary to prevent rapid onset of cellular senescence
P Rai, TT Onder, JJ Young, JL McFaline, B Pang, PC Dedon, ...
Proceedings of the National Academy of Sciences 106 (1), 169-174, 2009
2202009
Defects in purine nucleotide metabolism lead to substantial incorporation of xanthine and hypoxanthine into DNA and RNA
B Pang, JL McFaline, NE Burgis, M Dong, K Taghizadeh, MR Sullivan, ...
Proceedings of the National Academy of Sciences 109 (7), 2319-2324, 2012
2012012
On the design of CRISPR-based single-cell molecular screens
AJ Hill, JL McFaline-Figueroa, LM Starita, MJ Gasperini, KA Matreyek, ...
Nature methods 15 (4), 271-274, 2018
1812018
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition
JL McFaline-Figueroa, AJ Hill, X Qiu, D Jackson, J Shendure, C Trapnell
Nature genetics 51 (9), 1389-1398, 2019
1522019
Inferring causal gene regulatory networks from coupled single-cell expression dynamics using Scribe
X Qiu, A Rahimzamani, L Wang, B Ren, Q Mao, T Durham, ...
Cell systems 10 (3), 265-274. e11, 2020
150*2020
Quantification of DNA damage products resulting from deamination, oxidation and reaction with products of lipid peroxidation by liquid chromatography isotope dilution tandem …
K Taghizadeh, JL McFaline, B Pang, M Sullivan, M Dong, E Plummer, ...
Nature protocols 3 (8), 1287-1298, 2008
1452008
Minor changes in expression of the mismatch repair protein MSH2 exert a major impact on glioblastoma response to temozolomide
JL McFaline-Figueroa, CJ Braun, M Stanciu, ZD Nagel, P Mazzucato, ...
Cancer research 75 (15), 3127-3138, 2015
1342015
Thyroid hormone regulates distinct paths to maturation in pigment cell lineages
LM Saunders, AK Mishra, AJ Aman, VM Lewis, MB Toomey, JS Packer, ...
Elife 8, e45181, 2019
1062019
Predicting cellular responses to complex perturbations in high‐throughput screens
M Lotfollahi, A Klimovskaia Susmelj, C De Donno, L Hetzel, Y Ji, IL Ibarra, ...
Molecular systems biology 19 (6), e11517, 2023
702023
Integrated molecular analysis indicates undetectable change in DNA damage in mice after continuous irradiation at~ 400-fold natural background radiation
W Olipitz, D Wiktor-Brown, J Shuga, B Pang, J McFaline, P Lonkar, ...
Environmental health perspectives 120 (8), 1130-1136, 2012
612012
Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and glioma
SA O’Connor, HM Feldman, S Arora, P Hoellerbauer, CM Toledo, ...
Molecular systems biology 17 (6), e9522, 2021
34*2021
Targeting TWIST 1 through loss of function inhibits tumorigenicity of human glioblastoma
AM Mikheev, SA Mikheeva, LJ Severs, CC Funk, L Huang, ...
Molecular oncology 12 (7), 1188-1202, 2018
312018
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