| BugBase predicts organism-level microbiome phenotypes T Ward, J Larson, J Meulemans, B Hillmann, J Lynch, D Sidiropoulos, ... BioRxiv, 133462, 2017 | 360 | 2017 |
| Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice Q Le Bastard, T Ward, D Sidiropoulos, BM Hillmann, CL Chun, ... Scientific reports 8 (1), 6219, 2018 | 126 | 2018 |
| Entinostat Decreases Immune Suppression to Promote Antitumor Responses in a HER2+ Breast Tumor Microenvironment DN Sidiropoulos, CI Rafie, JK Jang, S Castanon, AG Baugh, E Gonzalez, ... Cancer immunology research 10 (5), 656-669, 2022 | 27 | 2022 |
| Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces A Deshpande, M Loth, DN Sidiropoulos, S Zhang, L Yuan, ATF Bell, ... Cell systems 14 (4), 285-301. e4, 2023 | 14 | 2023 |
| BugBase predicts organism-level microbiome phenotypes. bioRxiv 2017 T Ward, J Larson, J Meulemans, B Hillmann, J Lynch, D Sidiropoulos, ... Google Scholar, 0 | 9 | |
| PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration ATF Bell, JT Mitchell, AL Kiemen, K Fujikura, H Fedor, B Gambichler, ... bioRxiv, 2022.07. 16.500312, 2022 | 8 | 2022 |
| Wild primate microbiomes prevent weight gain in germ-free mice DN Sidiropoulos, GA Al-Ghalith, RR Shields-Cutler, TL Ward, AJ Johnson, ... Animal Microbiome 2, 1-11, 2020 | 8 | 2020 |
| Spatial transcriptomics of FFPE pancreatic intraepithelial neoplasias reveals cellular and molecular alterations of progression to pancreatic ductal carcinoma AT Bell, JT Mitchell, AL Kiemen, K Fujikura, H Fedor, B Gambichler, ... bioRxiv, 2022 | 7 | 2022 |
| Integrated T cell cytometry metrics for immune-monitoring applications in immunotherapy clinical trials DN Sidiropoulos, GL Stein-O’Brien, L Danilova, NE Gross, S Charmsaz, ... JCI insight 7 (19), 2022 | 6 | 2022 |
| BugBase predicts organism-level microbiome phenotypes, 133462 T Ward, J Larson, J Meulemans, B Hillmann, J Lynch, D Sidiropoulos, ... | 5 | 2017 |
| Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice. Sci Rep. 2018; 8: 6219 Q Le Bastard, T Ward, D Sidiropoulos, BM Hillmann, CL Chun, ... | 5 | |
| Inflammatory signaling in pancreatic cancer transfers between a single-cell RNA sequencing atlas and co-culture B Kinny-Köster, S Guinn, JA Tandurella, JT Mitchell, DN Sidiropoulos, ... bioRxiv, 2022.07. 14.500096, 2022 | 4 | 2022 |
| Entinostat Decreases Immune Suppression to Promote Antitumor Responses in a HER2+ Breast Tumor Microenvironment. Cancer Immunol Res. 2022; 10 (5): 656-69. doi: 10.1158/2326-6066 DN Sidiropoulos, CI Rafie, JK Jang, S Castanon, AG Baugh, E Gonzalez, ... CIR-21-0170, 0 | 4 | |
| Immune landscape of tertiary lymphoid structures in hepatocellular carcinoma (HCC) treated with neoadjuvant immune checkpoint blockade DH Shu, WJ Ho, LT Kagohara, A Girgis, SM Shin, L Danilova, JW Lee, ... bioRxiv, 2023 | 3 | 2023 |
| Inflammatory signaling and fibroblast-cancer cell interactions transfer from a harmonized human single-cell RNA sequencing atlas of pancreatic ductal adenocarcinoma to organoid … B Kinny-Koster, S Guinn, JA Tandurella, JT Mitchell, DN Sidiropoulos, ... BioRxiv, 2022 | 3 | 2022 |
| Systems immunology spanning tumors, lymph nodes, and periphery DN Sidiropoulos, WJ Ho, EM Jaffee, LT Kagohara, EJ Fertig Cell Reports Methods, 2023 | 1 | 2023 |
| Spatially resolved immune receptor repertoires from Visium transcriptomic libraries JM Montagne, DN Sidiropoulos, G Mo, Q Zhu, RA Anders, L Zheng, ... The Journal of Immunology 210 (1_Supplement), 251.02-251.02, 2023 | 1 | 2023 |
| Phenotypic shifts of tumor associated macrophages and STAT3 mediated suppression of myeloid derived suppressor cells drive sensitization of HER2+ tumor … DN Sidiropoulos, C Rafie, BJ Christmas, EF Davis-Marcisak, G Sharma, ... bioRxiv, 2021.01. 29.428708, 2021 | 1 | 2021 |
| Wild Primate Gut Microbiota Protect Against Obesity D Sidiropoulos, J Clayton, G Al-Ghalith, R Shields-Cutler, T Ward, ... | 1 | 2017 |
| Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial–Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma S Guinn, B Kinny-Köster, JA Tandurella, JT Mitchell, DN Sidiropoulos, ... Cancer Research 84 (9), 1517-1533, 2024 | | 2024 |
Dan KnightsUniversity of MinnesotaVerified email at umn.edu
