| PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis JL Gardy, MR Laird, F Chen, S Rey, CJ Walsh, M Ester, FSL Brinkman Bioinformatics 21 (5), 617-623, 2005 | 826 | 2005 |
| Whole-genome sequencing and social-network analysis of a tuberculosis outbreak JL Gardy, JC Johnston, SJH Sui, VJ Cook, L Shah, E Brodkin, S Rempel, ... New England Journal of Medicine 364 (8), 730-739, 2011 | 728 | 2011 |
| PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria JL Gardy, C Spencer, K Wang, M Ester, GE Tusnady, I Simon, S Hua, ... Nucleic acids research 31 (13), 3613-3617, 2003 | 483 | 2003 |
| Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis MR Farhat, BJ Shapiro, KJ Kieser, R Sultana, KR Jacobson, TC Victor, ... Nature genetics 45 (10), 1183-1189, 2013 | 371 | 2013 |
| InnateDB: facilitating systems‐level analyses of the mammalian innate immune response DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ... Molecular systems biology 4 (1), 218, 2008 | 360 | 2008 |
| Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis CB Ford, RR Shah, MK Maeda, S Gagneux, MB Murray, T Cohen, ... Nature genetics 45 (7), 784-790, 2013 | 356 | 2013 |
| Association between the 2008–09 seasonal influenza vaccine and pandemic H1N1 illness during spring–summer 2009: four observational studies from Canada DM Skowronski, G De Serres, NS Crowcroft, NZ Janjua, N Boulianne, ... PLoS Med 7 (4), e1000258, 2010 | 313 | 2010 |
| Towards a genomics-informed, real-time, global pathogen surveillance system JL Gardy, NJ Loman Nature Reviews Genetics 19 (1), 9, 2018 | 260 | 2018 |
| Rapid, comprehensive, and affordable mycobacterial diagnosis with whole genome sequencing: a prospective study CDW Pankhurst LJ, del Ojo Elias C, Votintseva AA, Walker TM, Cole K, Davies ... Lancet Respiratory Medicine, 2015 | 253* | 2015 |
| The commensal Streptococcus salivarius K12 downregulates the innate immune responses of human epithelial cells and promotes host-microbe homeostasis C Cosseau, DA Devine, E Dullaghan, JL Gardy, A Chikatamarla, ... Infection and immunity 76 (9), 4163-4175, 2008 | 224 | 2008 |
| Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation A Barsky, JL Gardy, REW Hancock, T Munzner Bioinformatics 23 (8), 1040-1042, 2007 | 201 | 2007 |
| Methods for predicting bacterial protein subcellular localization JL Gardy, FSL Brinkman Nature Reviews Microbiology 4 (1), 741-751, 2006 | 188 | 2006 |
| Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data X Didelot, J Gardy, C Colijn Molecular Biology and Evolution, doi: 10.1093/molbev/msu12, 2014 | 172 | 2014 |
| Metagenomics for pathogen detection in public health RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang Genome medicine 5 (9), 81, 2013 | 165 | 2013 |
| PSORTdb: a protein subcellular localization database for bacteria S Rey, M Acab, JL Gardy, MR Laird, K Defays, C Lambert, FSL Brinkman Nucleic acids research 33 (suppl_1), D164-D168, 2005 | 164 | 2005 |
| Intracellular receptor for human host defense peptide LL-37 in monocytes N Mookherjee, DND Lippert, P Hamill, R Falsafi, A Nijnik, J Kindrachuk, ... The Journal of Immunology 183 (4), 2688-2696, 2009 | 158 | 2009 |
| Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen S Lewenza, JL Gardy, FSL Brinkman, REW Hancock Genome research 15 (2), 321-329, 2005 | 132 | 2005 |
| Enabling a systems biology approach to immunology: focus on innate immunity JL Gardy, DJ Lynn, FSL Brinkman, REW Hancock Trends in immunology 30 (6), 249-262, 2009 | 130 | 2009 |
| Systems-level comparison of host-responses elicited by avian H5N1 and seasonal H1N1 influenza viruses in primary human macrophages SMY Lee, JL Gardy, CY Cheung, TKW Cheung, KPY Hui, NY Ip, Y Guan, ... PloS one 4 (12), e8072, 2009 | 129 | 2009 |
| Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing CRyPTIC Consortium and the 100,000 Genomes Project New England Journal of Medicine 379 (15), 1403-1415, 2018 | 123 | 2018 |
Patrick TangSidra Medical and Research CenterVerified email at sidra.org
