Hulda S. Haraldsdóttir
Hulda S. Haraldsdóttir
Senior Computational Systems Biologist, Healx
Verified email at - Homepage
Cited by
Cited by
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ...
Nucleic acids research 47 (D1), D614-D624, 2019
Consistent estimation of Gibbs energy using component contributions
E Noor, HS Haraldsdóttir, R Milo, RMT Fleming
PLoS computational biology 9 (7), e1003098, 2013
CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models
HS Haraldsdóttir, B Cousins, I Thiele, RMT Fleming, S Vempala
Bioinformatics 33 (11), 1741-1743, 2017
Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load
N Tepper, E Noor, D Amador-Noguez, HS Haraldsdóttir, R Milo, ...
PloS one 8 (9), e75370, 2013
Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction
HS Haraldsdóttir, I Thiele, RMT Fleming
Biophysical journal 102 (8), 1703-1711, 2012
Modeling the effects of commonly used drugs on human metabolism
S Sahoo, HS Haraldsdóttir, RMT Fleming, I Thiele
The FEBS journal 282 (2), 297-317, 2015
Identification of conserved moieties in metabolic networks by graph theoretical analysis of atom transition networks
HS Haraldsdóttir, RMT Fleming
PLOS Computational Biology 12 (11), e1004999, 2016
Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D
GA Preciat Gonzalez, LRP El Assal, A Noronha, I Thiele, HS Haraldsdóttir, ...
Journal of cheminformatics 9, 1-15, 2017
Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2
HS Haraldsdóttir, I Thiele, RMT Fleming
Journal of cheminformatics 6, 1-12, 2014
Structural conserved moiety splitting of a stoichiometric matrix
S Ghaderi, HS Haraldsdóttir, M Ahookhosh, S Arreckx, RMT Fleming
Journal of Theoretical Biology 499, 110276, 2020
Mechanistic model-driven exometabolomic characterisation of human dopaminergic neuronal metabolism
G Preciat, EL Moreno, AB Wegrzyn, CCW Willacey, J Modamio, ...
bioRxiv, 2021.06. 30.450562, 2021
Cardinality optimization in constraint-based modelling: application to human metabolism
RMT Fleming, HS Haraldsdottir, LH Minh, PT Vuong, T Hankemeier, ...
Bioinformatics 39 (9), btad450, 2023
Cardinality optimisation in constraint-based modelling of metabolism
HM Le, HS Haraldsdottir, TV Phan, I Thiele, RMT Fleming
Comparative evaluation of atom mapping algorithms for metabolic reactions
GP Gonzalez, L El Assal, I Thiele, H Haraldsdóttir, RMT Fleming
Thermodynamically constraining a genome-scale metabolic model with von Bertalan-ffy 2.0
L El Assal, HS Haraldsdóttir, RMT Fleming
Mat á ummyndaðri Gibbs-orku efnaskiptahvarfa til að skorða efnaskiptanet varmafræðilega
HS Haraldsdóttir
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