| Integrating mapping-, assembly-and haplotype-based approaches for calling variants in clinical sequencing applications A Rimmer, H Phan, I Mathieson, Z Iqbal, SRF Twigg, WGS500 Consortium, ... Nature genetics 46 (8), 912-918, 2014 | 1089 | 2014 |
| Plasmid classification in an era of whole-genome sequencing: application in studies of antibiotic resistance epidemiology A Orlek, N Stoesser, MF Anjum, M Doumith, MJ Ellington, T Peto, D Crook, ... Frontiers in microbiology 8, 182, 2017 | 199 | 2017 |
| Evaluation and improvement of the National Early Warning Score (NEWS2) for COVID-19: a multi-hospital study E Carr, R Bendayan, D Bean, M Stammers, W Wang, H Zhang, T Searle, ... BMC medicine 19 (1), 1-16, 2021 | 147 | 2021 |
| PINALOG: a novel approach to align protein interaction networks—implications for complex detection and function prediction HTT Phan, MJE Sternberg Bioinformatics 28 (9), 1239-1245, 2012 | 121 | 2012 |
| A large, refractory nosocomial outbreak of Klebsiella pneumoniae carbapenemase-producing Escherichia coli demonstrates carbapenemase gene outbreaks involving sink sites require … V Decraene, HTT Phan, R George, DH Wyllie, O Akinremi, Z Aiken, ... Antimicrobial agents and chemotherapy 62 (12), 10.1128/aac. 01689-18, 2018 | 119* | 2018 |
| Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli N Stoesser, AE Sheppard, G Peirano, LW Anson, L Pankhurst, R Sebra, ... Scientific reports 7 (1), 5917, 2017 | 116 | 2017 |
| Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study NJ Brendish, S Poole, VV Naidu, CT Mansbridge, NJ Norton, H Wheeler, ... The Lancet Respiratory Medicine 8 (12), 1192-1200, 2020 | 111 | 2020 |
| Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly … S George, L Pankhurst, A Hubbard, A Votintseva, N Stoesser, ... Microbial genomics 3 (8), e000118, 2017 | 100 | 2017 |
| Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome … J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ... Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017 | 95 | 2017 |
| Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids A Orlek, H Phan, AE Sheppard, M Doumith, M Ellington, T Peto, D Crook, ... Plasmid 91, 42-52, 2017 | 86 | 2017 |
| Inflammatory phenotyping predicts clinical outcome in COVID-19 H Burke, A Freeman, DC Cellura, BL Stuart, NJ Brendish, S Poole, ... Respiratory research 21, 1-9, 2020 | 80 | 2020 |
| Consortium, WGS; Wilkie, AOM; McVean, G.; Lunter, G. Integrating mapping-, assembly-and haplotype-based approaches for calling variants in clinical sequencing applications A Rimmer, H Phan, I Mathieson, Z Iqbal, SRF Twigg Nat Genet 46 (8), 912-8, 2014 | 77 | 2014 |
| High Rates of Human Fecal Carriage of mcr-1–Positive Multidrug-Resistant Enterobacteriaceae Emerge in China in Association With Successful Plasmid Families LL Zhong, HTT Phan, C Shen, KD Vihta, AE Sheppard, X Huang, KJ Zeng, ... Clinical Infectious Diseases 66 (5), 676-685, 2018 | 69 | 2018 |
| Carbapenem-resistant Enterobacteriaceae dispersal from sinks is linked to drain position and drainage rates in a laboratory model system P Aranega-Bou, RP George, NQ Verlander, S Paton, A Bennett, G Moore, ... Journal of Hospital Infection 102 (1), 63-69, 2019 | 63 | 2019 |
| Clinical characteristics, symptoms and outcomes of 1054 adults presenting to hospital with suspected COVID-19: a comparison of patients with and without SARS-CoV-2 infection NJ Brendish, S Poole, VV Naidu, CT Mansbridge, N Norton, F Borca, ... Journal of Infection 81 (6), 937-943, 2020 | 50 | 2020 |
| Increased prevalence of anti‐TNF therapy in paediatric inflammatory bowel disease is associated with a decline in surgical resections during childhood JJ Ashton, F Borca, E Mossotto, T Coelho, A Batra, NA Afzal, HTT Phan, ... Alimentary pharmacology & therapeutics 49 (4), 398-407, 2019 | 44 | 2019 |
| Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli TJ Davies, N Stoesser, AE Sheppard, M Abuoun, P Fowler, J Swann, ... Antimicrobial agents and chemotherapy 64 (6), 10.1128/aac. 02026-19, 2020 | 41 | 2020 |
| A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database A Orlek, H Phan, AE Sheppard, M Doumith, M Ellington, T Peto, D Crook, ... Data in brief 12, 423-426, 2017 | 39 | 2017 |
| Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape DM Muloi, BA Wee, DMH McClean, MJ Ward, L Pankhurst, H Phan, ... Nature microbiology 7 (4), 581-589, 2022 | 38 | 2022 |
| Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital A Kizny Gordon, HTT Phan, SI Lipworth, E Cheong, T Gottlieb, S George, ... Journal of Antimicrobial Chemotherapy 75 (4), 873-882, 2020 | 38 | 2020 |
